| TF name | Position | PWM scan score |
| ArcA | 291-351 | 27.703 |
| OxyR | 353-397 | 21.012 |
| Fis | 212-232 | 16.594 |
| Nac | 311-325 | 15.712 |
| ArgP | 218-230 | 15.143 |
| NagC | 206-228 | 14.981 |
| GcvA | 360-388 | 14.961 |
| PspF | 207-223 | 14.093 |
| Rob | 373-393 | 13.608 |
| CysB | 286-327 | 13.433 |
| GadE | 314-333 | 12.723 |
| PhoP | 338-354 | 12.536 |
| OmpR | 309-328 | 12.520 |
| TorR | 82-91 | 12.289 |
| CRP | 345-366 | 12.233 |
| DcuR | 338-392 | 12.162 |
| CpxR | 363-377 | 12.008 |
| MarA | 141-161 | 11.864 |
| Lrp | 312-323 | 11.734 |
| IdnR | 368-383 | 11.631 |
| LexA | 216-235 | 11.105 |
| FNR | 87-108 | 11.104 |
| Ada | 84-111 | 10.945 |
| ModE | 303-329 | 10.920 |
| H-NS | 360-374 | 10.617 |
| AgaR | 345-368 | 10.585 |
| AraC | 304-321 | 10.305 |
| GlpR | 140-159 | 10.010 |
| UlaR | 106-125 | 10.006 |
| CytR | 285-324 | 9.685 |
| NarL | 317-323 | 9.580 |
| Mlc | 363-385 | 9.353 |
| MelR | 77-94 | 9.264 |
| DeoR | 319-334 | 9.122 |
| ArgR | 340-355 | 9.069 |
| RcsB | 310-323 | 8.997 |
| IHF | 309-321 | 8.973 |
| DnaA | 221-229 | 8.186 |
| XylR | 246-263 | 8.055 |
| TyrR | 308-329 | 8.017 |
| NorR | 209-225 | 7.801 |
| SoxS | 306-323 | 7.769 |
| GntR | 307-326 | 7.745 |
| UxuR | 212-229 | 7.634 |
| Fur | 342-356 | 7.601 |
| LacI | 366-386 | 7.466 |
| MetR | 316-339 | 7.408 |
| PhoB | 20-39 | 7.299 |
| FhlA | 83-122 | 7.271 |
| MalT | 52-61 | 7.181 |
| NarP | 219-225 | 6.591 |
| GalS | 343-358 | 6.344 |
| GalR | 343-358 | 6.344 |
| RhaS | 72-88 | 6.212 |
| CueR | 33-51 | 6.191 |
| TrpR | 309-326 | 5.677 |
| MetJ | 13-20 | 5.645 |
| NtrC | 134-150 | 5.454 |
| PurR | 343-358 | 5.028 |