| TF name | Position | PWM scan score |
| ArcA | 178-238 | 32.448 |
| CysB | 197-238 | 22.721 |
| Mlc | 193-215 | 21.425 |
| OmpR | 137-156 | 19.741 |
| OxyR | 174-218 | 18.680 |
| CytR | 114-153 | 18.299 |
| ArgR | 207-222 | 18.241 |
| MarA | 358-378 | 16.858 |
| GadE | 230-249 | 16.543 |
| CRP | 138-159 | 16.528 |
| AgaR | 191-214 | 16.516 |
| NagC | 202-224 | 16.129 |
| H-NS | 179-193 | 15.975 |
| PhoP | 140-156 | 15.594 |
| GlpR | 140-159 | 15.586 |
| GcvA | 132-160 | 15.460 |
| Fis | 276-296 | 15.450 |
| FNR | 204-225 | 15.426 |
| Fur | 95-109 | 15.085 |
| MelR | 371-388 | 14.968 |
| ArgP | 122-134 | 13.809 |
| PhoB | 189-208 | 13.773 |
| Nac | 200-214 | 13.302 |
| Rob | 112-132 | 13.192 |
| XylR | 175-192 | 12.962 |
| DeoR | 228-243 | 12.870 |
| IHF | 275-287 | 12.458 |
| IdnR | 194-209 | 11.735 |
| LacI | 358-378 | 11.300 |
| DnaA | 286-294 | 11.178 |
| MetR | 362-385 | 11.132 |
| Lrp | 193-204 | 11.063 |
| LexA | 205-224 | 10.867 |
| UlaR | 189-208 | 10.841 |
| TyrR | 192-213 | 10.250 |
| TorR | 234-243 | 9.713 |
| FadR | 177-193 | 9.693 |
| RcsB | 208-221 | 9.570 |
| SoxS | 6-23 | 9.525 |
| NarL | 120-126 | 9.444 |
| Ada | 306-333 | 9.249 |
| CpxR | 315-329 | 9.196 |
| DcuR | 172-226 | 9.013 |
| NarP | 169-175 | 8.977 |
| PspF | 190-206 | 8.550 |
| ModE | 65-91 | 8.481 |
| AraC | 158-175 | 8.026 |
| NtrC | 133-149 | 7.273 |
| GntR | 279-298 | 7.233 |
| MalT | 166-175 | 7.224 |
| NorR | 221-237 | 7.079 |
| UxuR | 280-297 | 6.976 |
| GalR | 227-242 | 6.850 |
| GalS | 227-242 | 6.850 |
| FruR | 272-289 | 6.665 |
| PurR | 374-389 | 6.440 |
| MetJ | 141-148 | 5.744 |