| TF name | Position | PWM scan score |
| ArcA | 288-348 | 33.140 |
| Ada | 322-349 | 20.574 |
| CytR | 330-369 | 20.289 |
| Fur | 365-379 | 18.295 |
| CysB | 326-367 | 17.460 |
| OmpR | 352-371 | 17.358 |
| AgaR | 268-291 | 16.944 |
| PhoP | 275-291 | 16.192 |
| GlpR | 371-390 | 16.118 |
| OxyR | 315-359 | 16.063 |
| IHF | 325-337 | 15.966 |
| H-NS | 313-327 | 15.750 |
| FNR | 280-301 | 15.454 |
| NagC | 301-323 | 15.210 |
| GadE | 280-299 | 14.693 |
| ModE | 195-221 | 14.426 |
| GcvA | 307-335 | 14.415 |
| DcuR | 286-340 | 14.002 |
| Fis | 315-335 | 13.984 |
| AraC | 326-343 | 13.864 |
| GalR | 266-281 | 13.725 |
| GalS | 266-281 | 13.725 |
| CRP | 354-375 | 13.662 |
| Rob | 368-388 | 13.627 |
| Mlc | 297-319 | 13.611 |
| ArgR | 358-373 | 13.501 |
| Nac | 352-366 | 13.444 |
| UlaR | 342-361 | 13.361 |
| MelR | 37-54 | 12.775 |
| PurR | 266-281 | 12.773 |
| DeoR | 360-375 | 12.410 |
| MarA | 56-76 | 12.253 |
| FruR | 286-303 | 12.025 |
| XylR | 220-237 | 11.932 |
| RcsB | 311-324 | 11.671 |
| CpxR | 300-314 | 11.615 |
| UxuR | 330-347 | 10.629 |
| SoxS | 298-315 | 10.474 |
| TyrR | 264-285 | 10.339 |
| PspF | 170-186 | 10.272 |
| Lrp | 180-191 | 9.955 |
| PhoB | 10-29 | 9.939 |
| TorR | 273-282 | 9.722 |
| TrpR | 328-345 | 9.608 |
| ArgP | 317-329 | 8.671 |
| IdnR | 357-372 | 8.599 |
| MetR | 27-50 | 8.414 |
| NarL | 66-72 | 8.131 |
| NorR | 319-335 | 8.093 |
| MetJ | 219-226 | 7.986 |
| NtrC | 117-133 | 7.968 |
| FadR | 78-94 | 7.631 |
| LexA | 43-62 | 7.571 |
| DnaA | 295-303 | 7.045 |
| GntR | 42-61 | 6.462 |
| LacI | 365-385 | 5.841 |
| NarP | 338-344 | 5.835 |