| TF name | Position | PWM scan score |
| ArcA | 247-307 | 22.345 |
| OmpR | 377-396 | 18.327 |
| GcvA | 282-310 | 17.280 |
| CytR | 353-392 | 17.264 |
| CysB | 352-393 | 15.411 |
| RcsB | 377-390 | 15.051 |
| Fis | 326-346 | 14.819 |
| FNR | 322-343 | 13.017 |
| H-NS | 287-301 | 12.518 |
| PhoP | 283-299 | 11.909 |
| PspF | 39-55 | 11.548 |
| UxuR | 358-375 | 10.998 |
| IHF | 249-261 | 10.863 |
| GadE | 288-307 | 10.795 |
| ArgR | 292-307 | 10.763 |
| Lrp | 247-258 | 10.569 |
| SoxS | 279-296 | 10.217 |
| DnaA | 251-259 | 10.127 |
| MetR | 141-164 | 10.096 |
| CRP | 376-397 | 10.055 |
| Rob | 284-304 | 9.840 |
| MarA | 364-384 | 9.690 |
| AraC | 127-144 | 9.674 |
| NarL | 132-138 | 9.580 |
| DeoR | 333-348 | 9.370 |
| TorR | 218-227 | 9.287 |
| MelR | 101-118 | 8.999 |
| UlaR | 96-115 | 8.927 |
| DcuR | 48-102 | 8.861 |
| RhaS | 229-245 | 8.765 |
| NagC | 274-296 | 8.523 |
| ArgP | 269-281 | 8.459 |
| FadR | 302-318 | 8.436 |
| GlpR | 342-361 | 8.256 |
| Fur | 370-384 | 8.131 |
| PurR | 317-332 | 8.117 |
| CpxR | 242-256 | 8.085 |
| ModE | 199-225 | 8.041 |
| GntR | 362-381 | 7.631 |
| XylR | 373-390 | 7.544 |
| OxyR | 259-303 | 7.473 |
| Ada | 251-278 | 7.409 |
| LacI | 51-71 | 7.382 |
| NarP | 200-206 | 7.347 |
| NorR | 138-154 | 7.267 |
| IdnR | 383-398 | 7.179 |
| Nac | 182-196 | 7.178 |
| PhoB | 286-305 | 6.717 |
| FruR | 249-266 | 6.497 |
| TyrR | 62-83 | 6.212 |
| AgaR | 286-309 | 6.164 |
| GalS | 53-68 | 5.982 |
| GalR | 53-68 | 5.982 |
| MalT | 380-389 | 5.404 |
| NtrC | 374-390 | 5.014 |