| TF name | Position | PWM scan score |
| ArcA | 321-381 | 27.440 |
| CysB | 294-335 | 18.898 |
| RcsB | 331-344 | 17.421 |
| OxyR | 325-369 | 17.155 |
| Fur | 368-382 | 17.026 |
| Ada | 310-337 | 16.065 |
| TyrR | 295-316 | 15.875 |
| DcuR | 333-387 | 15.241 |
| OmpR | 319-338 | 15.035 |
| UlaR | 138-157 | 14.461 |
| Nac | 383-397 | 14.232 |
| CRP | 267-288 | 14.215 |
| NagC | 377-399 | 14.148 |
| IdnR | 29-44 | 13.622 |
| AgaR | 360-383 | 13.501 |
| MetR | 328-351 | 13.387 |
| FNR | 378-399 | 13.245 |
| GadE | 355-374 | 12.919 |
| MarA | 169-189 | 12.902 |
| XylR | 48-65 | 12.653 |
| Lrp | 178-189 | 12.550 |
| GcvA | 103-131 | 12.425 |
| ModE | 174-200 | 12.353 |
| CytR | 105-144 | 12.348 |
| PspF | 46-62 | 12.327 |
| ArgR | 177-192 | 12.230 |
| PurR | 249-264 | 11.942 |
| Fis | 192-212 | 11.544 |
| NorR | 103-119 | 11.370 |
| Mlc | 105-127 | 11.292 |
| IHF | 363-375 | 11.203 |
| DeoR | 154-169 | 10.908 |
| MelR | 317-334 | 10.858 |
| GlpR | 150-169 | 10.786 |
| H-NS | 116-130 | 10.645 |
| UxuR | 360-377 | 10.545 |
| FhlA | 348-387 | 10.533 |
| MetJ | 293-300 | 10.434 |
| TorR | 174-183 | 10.422 |
| SoxS | 107-124 | 10.389 |
| CpxR | 183-197 | 9.958 |
| DnaA | 204-212 | 9.559 |
| PhoP | 40-56 | 9.349 |
| NarL | 338-344 | 9.333 |
| Rob | 273-293 | 9.330 |
| AraC | 93-110 | 9.010 |
| FruR | 364-381 | 9.005 |
| GntR | 98-117 | 8.537 |
| GalS | 54-69 | 8.472 |
| GalR | 54-69 | 8.472 |
| NarP | 113-119 | 8.306 |
| CueR | 82-100 | 7.920 |
| TrpR | 185-202 | 7.802 |
| ArgP | 306-318 | 7.791 |
| PhoB | 324-343 | 7.665 |
| NtrC | 144-160 | 6.501 |
| LacI | 185-205 | 5.851 |
| MalT | 202-211 | 5.404 |