| TF name | Position | PWM scan score |
| ArcA | 131-191 | 23.704 |
| TyrR | 185-206 | 15.954 |
| FNR | 187-208 | 15.571 |
| AgaR | 174-197 | 15.207 |
| IHF | 50-62 | 14.833 |
| PhoP | 232-248 | 14.803 |
| OxyR | 296-340 | 14.758 |
| IdnR | 293-308 | 13.622 |
| Nac | 162-176 | 13.493 |
| CysB | 170-211 | 13.210 |
| GcvA | 151-179 | 13.089 |
| OmpR | 377-396 | 12.735 |
| XylR | 312-329 | 12.653 |
| ArgR | 46-61 | 12.454 |
| PspF | 310-326 | 12.327 |
| Fis | 228-248 | 12.288 |
| RcsB | 317-330 | 12.275 |
| NagC | 189-211 | 12.159 |
| CytR | 299-338 | 12.011 |
| GadE | 130-149 | 11.770 |
| MetR | 327-350 | 11.493 |
| ModE | 191-217 | 11.373 |
| NorR | 367-383 | 11.370 |
| Mlc | 369-391 | 11.292 |
| Rob | 74-94 | 11.240 |
| Lrp | 43-54 | 11.110 |
| GntR | 242-261 | 10.967 |
| Fur | 176-190 | 10.668 |
| H-NS | 380-394 | 10.645 |
| UlaR | 172-191 | 10.542 |
| SoxS | 371-388 | 10.389 |
| CRP | 184-205 | 10.305 |
| DnaA | 240-248 | 10.218 |
| AraC | 233-250 | 10.015 |
| Ada | 362-389 | 9.971 |
| MetJ | 242-249 | 9.765 |
| ArgP | 49-61 | 9.316 |
| FhlA | 151-190 | 9.147 |
| LacI | 203-223 | 8.802 |
| GalS | 318-333 | 8.472 |
| GalR | 318-333 | 8.472 |
| DeoR | 375-390 | 8.393 |
| NarP | 377-383 | 8.306 |
| CueR | 346-364 | 7.920 |
| CpxR | 306-320 | 7.808 |
| GlpR | 186-205 | 7.735 |
| UxuR | 47-64 | 7.523 |
| MelR | 362-379 | 7.482 |
| PhoB | 192-211 | 7.227 |
| RhaS | 69-85 | 7.188 |
| TorR | 157-166 | 7.033 |
| NarL | 168-174 | 6.422 |
| CaiF | 197-241 | 6.343 |
| FadR | 254-270 | 6.133 |
| MarA | 356-376 | 6.113 |
| MalT | 125-134 | 5.864 |
| DcuR | 300-354 | 5.642 |
| LexA | 187-206 | 5.598 |