| TF name | Position | PWM scan score |
| CysB | 231-272 | 22.627 |
| ArcA | 198-258 | 22.599 |
| FNR | 222-243 | 19.382 |
| CytR | 143-182 | 18.675 |
| PhoB | 262-281 | 17.950 |
| NagC | 69-91 | 16.365 |
| OxyR | 59-103 | 15.905 |
| CRP | 219-240 | 14.822 |
| DeoR | 231-246 | 14.682 |
| OmpR | 224-243 | 14.236 |
| SoxS | 215-232 | 14.042 |
| IHF | 147-159 | 13.416 |
| UxuR | 343-360 | 13.244 |
| IdnR | 167-182 | 12.900 |
| H-NS | 227-241 | 12.886 |
| GlpR | 221-240 | 12.813 |
| PhoP | 155-171 | 12.725 |
| MelR | 144-161 | 12.217 |
| XylR | 220-237 | 12.169 |
| Mlc | 67-89 | 12.161 |
| TyrR | 60-81 | 11.586 |
| Lrp | 67-78 | 11.495 |
| RcsB | 162-175 | 11.386 |
| ArgP | 230-242 | 11.360 |
| GntR | 165-184 | 11.351 |
| FruR | 139-156 | 11.274 |
| GadE | 65-84 | 11.118 |
| MarA | 367-387 | 10.865 |
| UlaR | 57-76 | 10.148 |
| Fis | 218-238 | 9.960 |
| Nac | 226-240 | 9.909 |
| GcvA | 143-171 | 9.598 |
| PspF | 23-39 | 9.480 |
| MetJ | 198-205 | 9.447 |
| CpxR | 61-75 | 8.922 |
| ModE | 63-89 | 8.861 |
| AraC | 370-387 | 8.839 |
| Rob | 173-193 | 8.832 |
| ArgR | 162-177 | 8.695 |
| Fur | 161-175 | 8.303 |
| NarL | 301-307 | 8.280 |
| NorR | 105-121 | 8.254 |
| AgaR | 53-76 | 8.228 |
| CueR | 297-315 | 7.702 |
| DnaA | 180-188 | 6.778 |
| TorR | 81-90 | 6.464 |
| NtrC | 221-237 | 6.409 |
| Ada | 48-75 | 5.586 |
| LacI | 154-174 | 5.475 |
| FadR | 238-254 | 5.278 |
| MalT | 147-156 | 5.021 |