| TF name | Position | PWM scan score |
| CRP | 164-185 | 17.965 |
| MetR | 270-293 | 17.581 |
| FNR | 173-194 | 17.484 |
| PhoP | 383-399 | 17.395 |
| AgaR | 165-188 | 16.710 |
| CpxR | 384-398 | 16.561 |
| ArcA | 129-189 | 16.516 |
| GcvA | 307-335 | 16.018 |
| Fur | 167-181 | 14.209 |
| UlaR | 163-182 | 14.056 |
| NagC | 164-186 | 13.620 |
| OmpR | 305-324 | 13.416 |
| CytR | 329-368 | 12.925 |
| IHF | 325-337 | 12.493 |
| PhoB | 3-22 | 11.914 |
| GadE | 173-192 | 11.633 |
| ModE | 272-298 | 11.526 |
| PspF | 307-323 | 11.511 |
| Mlc | 145-167 | 11.460 |
| Rob | 316-336 | 11.417 |
| NorR | 166-182 | 11.370 |
| ArgR | 317-332 | 11.317 |
| Nac | 381-395 | 11.113 |
| Fis | 325-345 | 10.442 |
| FadR | 46-62 | 10.398 |
| NarL | 327-333 | 9.729 |
| TyrR | 161-182 | 9.670 |
| CysB | 147-188 | 9.584 |
| Lrp | 170-181 | 9.554 |
| MarA | 116-136 | 9.518 |
| GlpR | 307-326 | 9.455 |
| Ada | 160-187 | 9.239 |
| AraC | 275-292 | 9.141 |
| RcsB | 81-94 | 8.969 |
| ArgP | 181-193 | 8.888 |
| DeoR | 384-399 | 8.872 |
| H-NS | 313-327 | 8.730 |
| OxyR | 243-287 | 8.134 |
| DcuR | 315-369 | 7.767 |
| XylR | 161-178 | 7.411 |
| MetJ | 179-186 | 7.244 |
| DnaA | 91-99 | 7.135 |
| MalT | 77-86 | 7.103 |
| MelR | 322-339 | 6.438 |
| GntR | 305-324 | 6.386 |
| UxuR | 379-396 | 6.271 |
| NtrC | 215-231 | 6.166 |
| IdnR | 300-315 | 6.101 |
| TorR | 92-101 | 6.070 |
| LacI | 132-152 | 5.888 |
| SoxS | 82-99 | 5.867 |
| RhaS | 261-277 | 5.858 |
| CueR | 251-269 | 5.412 |
| GalS | 303-318 | 5.082 |
| GalR | 303-318 | 5.082 |