| TF name | Position | PWM scan score |
| XylR | 40-57 | 17.883 |
| ArcA | 34-94 | 17.611 |
| Nac | 250-264 | 15.421 |
| IHF | 306-318 | 14.054 |
| AgaR | 34-57 | 14.017 |
| GlpR | 109-128 | 13.704 |
| FNR | 137-158 | 13.145 |
| DeoR | 227-242 | 12.739 |
| CysB | 234-275 | 12.684 |
| PhoB | 202-221 | 12.521 |
| GadE | 107-126 | 12.158 |
| OxyR | 207-251 | 11.836 |
| Fis | 111-131 | 11.828 |
| PhoP | 305-321 | 11.397 |
| UxuR | 299-316 | 11.176 |
| MarA | 339-359 | 11.140 |
| ModE | 258-284 | 11.070 |
| Fur | 126-140 | 10.984 |
| OmpR | 93-112 | 10.961 |
| CRP | 300-321 | 10.808 |
| GcvA | 33-61 | 10.596 |
| Mlc | 223-245 | 10.480 |
| DcuR | 280-334 | 10.433 |
| SoxS | 98-115 | 10.331 |
| RcsB | 104-117 | 9.767 |
| ArgR | 257-272 | 9.697 |
| FruR | 286-303 | 9.359 |
| H-NS | 107-121 | 9.307 |
| MetJ | 255-262 | 9.177 |
| TorR | 11-20 | 9.157 |
| NarL | 13-19 | 9.129 |
| Lrp | 131-142 | 8.913 |
| MelR | 241-258 | 8.889 |
| NagC | 225-247 | 8.582 |
| ArgP | 70-82 | 8.581 |
| CpxR | 151-165 | 8.565 |
| LacI | 133-153 | 8.453 |
| TyrR | 288-309 | 8.244 |
| CytR | 353-392 | 8.050 |
| GalS | 290-305 | 7.830 |
| GalR | 290-305 | 7.830 |
| NorR | 142-158 | 7.737 |
| AraC | 162-179 | 7.644 |
| MetR | 56-79 | 7.589 |
| NarP | 230-236 | 7.489 |
| PspF | 107-123 | 7.482 |
| FadR | 157-173 | 7.473 |
| Rob | 229-249 | 7.446 |
| GntR | 9-28 | 7.237 |
| DnaA | 208-216 | 7.045 |
| RhaS | 51-67 | 6.689 |
| UlaR | 315-334 | 6.684 |
| IdnR | 301-316 | 6.457 |
| MalT | 246-255 | 6.443 |
| NtrC | 65-81 | 6.410 |
| FhlA | 254-293 | 6.253 |