| TF name | Position | PWM scan score |
| ArcA | 261-321 | 25.661 |
| CysB | 274-315 | 17.124 |
| CytR | 326-365 | 16.950 |
| FhlA | 135-174 | 16.655 |
| Fis | 45-65 | 15.254 |
| NagC | 300-322 | 14.621 |
| OxyR | 271-315 | 14.482 |
| MarA | 312-332 | 14.075 |
| Ada | 42-69 | 13.976 |
| CpxR | 284-298 | 13.486 |
| PhoP | 263-279 | 13.358 |
| Fur | 318-332 | 12.916 |
| RcsB | 6-19 | 12.744 |
| ModE | 200-226 | 12.526 |
| GlpR | 328-347 | 12.301 |
| AgaR | 364-387 | 12.289 |
| CRP | 270-291 | 11.975 |
| IHF | 264-276 | 11.892 |
| XylR | 43-60 | 11.715 |
| OmpR | 330-349 | 11.701 |
| H-NS | 287-301 | 11.486 |
| GcvA | 269-297 | 11.436 |
| SoxS | 31-48 | 10.962 |
| GntR | 270-289 | 10.959 |
| FNR | 45-66 | 10.879 |
| DeoR | 249-264 | 10.873 |
| DcuR | 251-305 | 10.685 |
| NarL | 358-364 | 10.377 |
| Mlc | 269-291 | 10.122 |
| Nac | 199-213 | 10.098 |
| ArgR | 281-296 | 9.953 |
| GadE | 334-353 | 9.912 |
| Lrp | 5-16 | 9.740 |
| UlaR | 324-343 | 9.604 |
| AraC | 294-311 | 8.823 |
| MelR | 318-335 | 8.805 |
| TyrR | 207-228 | 8.766 |
| RhaS | 231-247 | 8.578 |
| ArgP | 342-354 | 8.534 |
| UxuR | 278-295 | 8.329 |
| LacI | 122-142 | 8.285 |
| MetR | 181-204 | 8.208 |
| LexA | 49-68 | 7.947 |
| PhoB | 288-307 | 7.848 |
| NorR | 82-98 | 7.710 |
| TorR | 291-300 | 7.664 |
| TrpR | 203-220 | 7.431 |
| PspF | 288-304 | 6.945 |
| IdnR | 157-172 | 6.645 |
| FadR | 117-133 | 6.386 |
| Rob | 375-395 | 6.363 |
| NarP | 117-123 | 6.229 |
| MetJ | 294-301 | 5.744 |
| DnaA | 275-283 | 5.238 |