| TF name | Position | PWM scan score |
| ArcA | 241-301 | 25.311 |
| OmpR | 262-281 | 17.416 |
| Fur | 259-273 | 16.868 |
| CRP | 258-279 | 16.836 |
| Mlc | 267-289 | 16.456 |
| AraC | 88-105 | 15.038 |
| GadE | 118-137 | 14.705 |
| MarA | 319-339 | 14.691 |
| CysB | 286-327 | 14.610 |
| AgaR | 263-286 | 14.524 |
| TyrR | 367-388 | 14.385 |
| Rob | 262-282 | 14.294 |
| LexA | 32-51 | 13.911 |
| XylR | 186-203 | 13.903 |
| H-NS | 265-279 | 13.728 |
| NagC | 376-398 | 13.452 |
| Fis | 67-87 | 12.789 |
| UlaR | 256-275 | 12.432 |
| ArgR | 305-320 | 12.327 |
| IHF | 180-192 | 12.184 |
| OxyR | 276-320 | 12.134 |
| RcsB | 88-101 | 12.069 |
| CpxR | 262-276 | 12.044 |
| GcvA | 308-336 | 11.839 |
| DeoR | 378-393 | 11.740 |
| FNR | 259-280 | 11.715 |
| GalR | 277-292 | 11.542 |
| GalS | 277-292 | 11.542 |
| CytR | 296-335 | 11.390 |
| PhoP | 376-392 | 11.196 |
| SoxS | 321-338 | 11.089 |
| GntR | 73-92 | 10.839 |
| ModE | 31-57 | 10.554 |
| Nac | 65-79 | 10.342 |
| MelR | 128-145 | 10.160 |
| Lrp | 118-129 | 9.907 |
| GlpR | 318-337 | 9.862 |
| PhoB | 316-335 | 9.826 |
| DcuR | 296-350 | 9.657 |
| NarL | 62-68 | 9.129 |
| RhaS | 67-83 | 8.898 |
| PspF | 262-278 | 8.748 |
| UxuR | 350-367 | 8.406 |
| DnaA | 195-203 | 8.280 |
| CaiF | 60-104 | 8.139 |
| ArgP | 188-200 | 7.875 |
| NtrC | 239-255 | 7.649 |
| CueR | 318-336 | 7.212 |
| IdnR | 268-283 | 7.152 |
| Ada | 253-280 | 7.003 |
| NorR | 264-280 | 6.918 |
| MetR | 137-160 | 6.698 |
| FruR | 186-203 | 6.488 |
| LacI | 241-261 | 6.049 |
| MetJ | 272-279 | 5.992 |
| PurR | 277-292 | 5.493 |
| NarP | 88-94 | 5.283 |
| TorR | 138-147 | 5.212 |