| TF name | Position | PWM scan score |
| ArcA | 187-247 | 24.161 |
| NagC | 325-347 | 19.489 |
| ModE | 98-124 | 18.462 |
| TyrR | 105-126 | 15.927 |
| FNR | 295-316 | 15.823 |
| CysB | 1-42 | 15.409 |
| OmpR | 214-233 | 14.693 |
| GadE | 214-233 | 14.391 |
| Fis | 328-348 | 14.015 |
| Nac | 216-230 | 13.409 |
| UlaR | 56-75 | 13.087 |
| AgaR | 217-240 | 13.011 |
| XylR | 293-310 | 12.965 |
| Fur | 218-232 | 12.946 |
| ArgP | 327-339 | 12.723 |
| MetR | 215-238 | 12.683 |
| PhoB | 357-376 | 12.570 |
| TorR | 185-194 | 12.045 |
| H-NS | 359-373 | 12.044 |
| CytR | 356-395 | 11.895 |
| Rob | 354-374 | 11.781 |
| PurR | 342-357 | 11.655 |
| MetJ | 151-158 | 11.615 |
| CRP | 246-267 | 11.570 |
| MelR | 369-386 | 11.515 |
| Lrp | 35-46 | 11.269 |
| DeoR | 198-213 | 11.244 |
| IHF | 368-380 | 11.190 |
| IdnR | 239-254 | 10.936 |
| GalS | 342-357 | 10.850 |
| GalR | 342-357 | 10.850 |
| CpxR | 355-369 | 10.464 |
| NarL | 191-197 | 10.241 |
| SoxS | 353-370 | 9.872 |
| OxyR | 27-71 | 9.859 |
| GcvA | 299-327 | 9.830 |
| FadR | 6-22 | 9.595 |
| PhoP | 187-203 | 9.563 |
| DnaA | 58-66 | 9.246 |
| FruR | 364-381 | 9.195 |
| RcsB | 366-379 | 8.653 |
| MarA | 341-361 | 8.644 |
| DcuR | 313-367 | 8.233 |
| TrpR | 29-46 | 8.049 |
| Ada | 357-384 | 7.715 |
| AraC | 220-237 | 7.687 |
| GlpR | 194-213 | 7.488 |
| LexA | 277-296 | 7.477 |
| NarP | 45-51 | 7.347 |
| UxuR | 215-232 | 7.238 |
| MalT | 371-380 | 6.977 |
| PspF | 4-20 | 6.327 |
| GntR | 231-250 | 6.287 |
| ArgR | 45-60 | 6.222 |
| LacI | 90-110 | 5.206 |
| NorR | 250-266 | 5.024 |