| TF name | Position | PWM scan score |
| ArcA | 275-335 | 37.690 |
| OxyR | 274-318 | 25.554 |
| DcuR | 233-287 | 25.421 |
| CysB | 289-330 | 23.505 |
| CRP | 333-354 | 20.064 |
| AraC | 325-342 | 18.946 |
| FNR | 303-324 | 18.895 |
| GadE | 259-278 | 18.083 |
| PhoB | 234-253 | 18.059 |
| CytR | 328-367 | 18.055 |
| GcvA | 327-355 | 17.853 |
| OmpR | 248-267 | 17.554 |
| Mlc | 94-116 | 17.454 |
| Nac | 299-313 | 16.592 |
| RcsB | 1-14 | 16.028 |
| PhoP | 330-346 | 15.821 |
| Fur | 272-286 | 15.507 |
| ArgR | 309-324 | 15.417 |
| GntR | 298-317 | 15.400 |
| SoxS | 319-336 | 15.282 |
| Rob | 256-276 | 15.193 |
| AgaR | 252-275 | 14.955 |
| CpxR | 143-157 | 14.786 |
| MetR | 260-283 | 14.707 |
| MarA | 301-321 | 14.335 |
| H-NS | 323-337 | 14.184 |
| IHF | 61-73 | 14.037 |
| ArgP | 379-391 | 13.606 |
| NagC | 256-278 | 13.575 |
| DeoR | 51-66 | 13.485 |
| Fis | 325-345 | 13.265 |
| UlaR | 267-286 | 13.187 |
| UxuR | 103-120 | 13.147 |
| XylR | 140-157 | 12.525 |
| NorR | 360-376 | 12.451 |
| FruR | 321-338 | 12.005 |
| ModE | 38-64 | 11.686 |
| MelR | 269-286 | 11.653 |
| Lrp | 275-286 | 11.609 |
| GlpR | 255-274 | 11.426 |
| Ada | 259-286 | 10.908 |
| TyrR | 246-267 | 10.398 |
| IdnR | 326-341 | 9.838 |
| DnaA | 17-25 | 9.821 |
| PspF | 380-396 | 9.631 |
| NarL | 302-308 | 9.333 |
| LacI | 334-354 | 9.306 |
| FhlA | 281-320 | 9.152 |
| TorR | 336-345 | 9.030 |
| LexA | 302-321 | 8.723 |
| CaiF | 237-281 | 7.570 |
| NarP | 250-256 | 7.325 |
| NtrC | 169-185 | 6.827 |
| FadR | 98-114 | 6.702 |
| TrpR | 354-371 | 6.700 |
| MetJ | 365-372 | 6.561 |
| PurR | 164-179 | 6.090 |
| GalS | 193-208 | 5.139 |
| GalR | 193-208 | 5.139 |
| MalT | 345-354 | 5.020 |