| TF name | Position | PWM scan score |
| ArcA | 58-118 | 25.433 |
| OxyR | 269-313 | 21.990 |
| H-NS | 82-96 | 15.245 |
| Fis | 72-92 | 14.808 |
| XylR | 89-106 | 14.803 |
| DcuR | 78-132 | 14.549 |
| LacI | 359-379 | 14.231 |
| OmpR | 83-102 | 13.913 |
| AgaR | 55-78 | 13.826 |
| NagC | 73-95 | 13.721 |
| CRP | 74-95 | 13.586 |
| CysB | 42-83 | 13.442 |
| GcvA | 76-104 | 13.115 |
| FNR | 72-93 | 12.781 |
| Rob | 79-99 | 12.676 |
| AraC | 264-281 | 12.331 |
| GadE | 81-100 | 11.967 |
| SoxS | 293-310 | 11.897 |
| FadR | 7-23 | 11.893 |
| GntR | 14-33 | 11.878 |
| Fur | 359-373 | 11.703 |
| Nac | 71-85 | 11.701 |
| PhoB | 84-103 | 11.657 |
| IHF | 371-383 | 11.636 |
| GlpR | 135-154 | 11.559 |
| DeoR | 183-198 | 11.440 |
| PhoP | 183-199 | 11.379 |
| IdnR | 298-313 | 11.312 |
| ModE | 133-159 | 11.288 |
| MelR | 111-128 | 11.203 |
| ArgR | 78-93 | 11.172 |
| TorR | 62-71 | 11.087 |
| MetR | 289-312 | 10.617 |
| RcsB | 139-152 | 10.586 |
| CytR | 353-392 | 10.458 |
| Lrp | 264-275 | 10.377 |
| CpxR | 294-308 | 10.352 |
| FruR | 288-305 | 9.907 |
| TyrR | 264-285 | 9.757 |
| NorR | 233-249 | 9.681 |
| NarP | 69-75 | 9.477 |
| UlaR | 354-373 | 9.097 |
| ArgP | 241-253 | 8.948 |
| MarA | 86-106 | 8.925 |
| NarL | 367-373 | 8.439 |
| NtrC | 326-342 | 7.817 |
| Mlc | 65-87 | 7.674 |
| Ada | 69-96 | 7.547 |
| LexA | 269-288 | 7.481 |
| MetJ | 142-149 | 7.197 |
| PspF | 79-95 | 6.505 |
| FhlA | 271-310 | 6.410 |
| UxuR | 275-292 | 6.348 |
| DnaA | 98-106 | 6.206 |
| GalR | 313-328 | 5.892 |
| GalS | 313-328 | 5.892 |