| TF name | Position | PWM scan score |
| ArcA | 305-365 | 29.904 |
| CytR | 328-367 | 24.286 |
| CysB | 322-363 | 20.187 |
| GcvA | 323-351 | 19.787 |
| OxyR | 298-342 | 18.320 |
| Mlc | 290-312 | 18.154 |
| OmpR | 340-359 | 18.152 |
| XylR | 300-317 | 18.010 |
| IdnR | 333-348 | 17.342 |
| DcuR | 195-249 | 17.299 |
| NagC | 260-282 | 17.137 |
| AgaR | 128-151 | 16.506 |
| IHF | 163-175 | 16.067 |
| GadE | 269-288 | 15.605 |
| CRP | 323-344 | 14.667 |
| PhoB | 351-370 | 14.635 |
| RcsB | 327-340 | 14.284 |
| FNR | 124-145 | 14.203 |
| PhoP | 326-342 | 14.095 |
| H-NS | 353-367 | 13.524 |
| GlpR | 340-359 | 13.275 |
| UxuR | 110-127 | 13.056 |
| Fur | 14-28 | 12.946 |
| Rob | 218-238 | 12.881 |
| LacI | 305-325 | 12.368 |
| ArgP | 305-317 | 12.063 |
| FhlA | 262-301 | 11.758 |
| NorR | 323-339 | 11.662 |
| Fis | 130-150 | 11.633 |
| SoxS | 334-351 | 11.605 |
| ArgR | 334-349 | 11.146 |
| MetR | 295-318 | 11.031 |
| TorR | 268-277 | 10.851 |
| TyrR | 325-346 | 10.687 |
| Nac | 180-194 | 10.375 |
| CpxR | 352-366 | 10.365 |
| Lrp | 304-315 | 10.304 |
| MarA | 232-252 | 9.957 |
| MelR | 136-153 | 9.698 |
| Ada | 118-145 | 9.642 |
| UlaR | 320-339 | 9.416 |
| DnaA | 132-140 | 9.246 |
| MalT | 266-275 | 9.073 |
| DeoR | 291-306 | 9.048 |
| NarL | 77-83 | 8.681 |
| AraC | 15-32 | 8.200 |
| PurR | 283-298 | 8.063 |
| ModE | 254-280 | 7.940 |
| RhaS | 82-98 | 7.587 |
| PspF | 144-160 | 7.398 |
| NarP | 73-79 | 7.347 |
| GntR | 260-279 | 6.933 |
| FadR | 62-78 | 6.894 |
| FruR | 337-354 | 6.795 |
| CueR | 98-116 | 5.889 |
| NtrC | 54-70 | 5.826 |
| MetJ | 361-368 | 5.813 |