| TF name | Position | PWM scan score |
| ArcA | 250-310 | 28.844 |
| Mlc | 76-98 | 20.041 |
| TyrR | 251-272 | 19.566 |
| CysB | 59-100 | 18.810 |
| OxyR | 105-149 | 18.268 |
| OmpR | 132-151 | 18.242 |
| CytR | 255-294 | 18.185 |
| NagC | 254-276 | 17.869 |
| FNR | 263-284 | 17.202 |
| DcuR | 116-170 | 16.641 |
| H-NS | 267-281 | 16.515 |
| Fis | 65-85 | 16.051 |
| PhoB | 149-168 | 15.667 |
| MetR | 258-281 | 14.967 |
| Rob | 89-109 | 14.542 |
| PhoP | 332-348 | 14.216 |
| CRP | 89-110 | 14.025 |
| DeoR | 12-27 | 13.735 |
| IdnR | 171-186 | 13.622 |
| CpxR | 184-198 | 13.463 |
| RcsB | 143-156 | 13.445 |
| UlaR | 136-155 | 13.173 |
| AgaR | 106-129 | 13.157 |
| GntR | 368-387 | 13.136 |
| IHF | 140-152 | 12.859 |
| AraC | 53-70 | 12.667 |
| GadE | 256-275 | 12.456 |
| Nac | 259-273 | 12.413 |
| Fur | 267-281 | 11.926 |
| ArgP | 29-41 | 11.915 |
| ArgR | 89-104 | 11.809 |
| UxuR | 170-187 | 11.626 |
| MarA | 369-389 | 11.522 |
| GcvA | 58-86 | 11.430 |
| GlpR | 24-43 | 11.396 |
| ModE | 262-288 | 11.241 |
| Lrp | 256-267 | 11.207 |
| XylR | 266-283 | 11.203 |
| RhaS | 231-247 | 11.185 |
| Ada | 163-190 | 10.787 |
| MelR | 267-284 | 10.625 |
| TorR | 173-182 | 10.350 |
| DnaA | 60-68 | 9.731 |
| MetJ | 304-311 | 9.520 |
| PspF | 131-147 | 9.453 |
| NarL | 158-164 | 9.240 |
| FruR | 365-382 | 8.981 |
| FhlA | 312-351 | 8.513 |
| LacI | 347-367 | 8.282 |
| SoxS | 71-88 | 7.857 |
| MalT | 114-123 | 7.847 |
| NarP | 377-383 | 7.423 |
| NorR | 241-257 | 7.079 |
| GalR | 93-108 | 6.972 |
| GalS | 93-108 | 6.972 |
| PurR | 327-342 | 6.750 |
| TrpR | 359-376 | 6.647 |
| NtrC | 154-170 | 6.093 |
| LexA | 271-290 | 6.011 |
| FadR | 366-382 | 5.581 |
| CueR | 311-329 | 5.533 |