| TF name | Position | PWM scan score |
| Mlc | 256-278 | 18.119 |
| ArcA | 11-71 | 17.771 |
| Fis | 89-109 | 17.426 |
| CysB | 29-70 | 16.462 |
| AgaR | 162-185 | 15.884 |
| OmpR | 94-113 | 15.126 |
| SoxS | 47-64 | 14.470 |
| PspF | 178-194 | 14.449 |
| Rob | 53-73 | 13.695 |
| NagC | 172-194 | 13.395 |
| Lrp | 94-105 | 13.117 |
| XylR | 180-197 | 12.968 |
| RcsB | 185-198 | 12.867 |
| H-NS | 56-70 | 12.652 |
| Fur | 50-64 | 12.639 |
| AraC | 50-67 | 12.600 |
| CytR | 242-281 | 12.212 |
| Nac | 54-68 | 12.035 |
| FNR | 116-137 | 11.924 |
| CRP | 257-278 | 11.858 |
| UlaR | 13-32 | 11.695 |
| IHF | 89-101 | 11.649 |
| FhlA | 144-183 | 11.565 |
| GntR | 113-132 | 11.410 |
| CpxR | 249-263 | 10.828 |
| GadE | 23-42 | 10.732 |
| RhaS | 40-56 | 10.612 |
| NtrC | 8-24 | 10.337 |
| PhoB | 177-196 | 10.270 |
| DeoR | 90-105 | 10.220 |
| ArgP | 57-69 | 9.970 |
| FadR | 276-292 | 9.968 |
| MetJ | 320-327 | 9.765 |
| IdnR | 306-321 | 9.492 |
| OxyR | 23-67 | 9.415 |
| Ada | 38-65 | 8.823 |
| PhoP | 52-68 | 8.761 |
| ArgR | 178-193 | 8.630 |
| MelR | 275-292 | 8.427 |
| NarL | 91-97 | 8.280 |
| MarA | 116-136 | 8.199 |
| ModE | 23-49 | 8.152 |
| GcvA | 272-300 | 8.012 |
| UxuR | 151-168 | 7.973 |
| GalS | 186-201 | 7.890 |
| GalR | 186-201 | 7.890 |
| DnaA | 3-11 | 7.738 |
| PurR | 371-386 | 6.951 |
| NarP | 116-122 | 6.794 |
| TyrR | 180-201 | 6.571 |
| TorR | 265-274 | 6.344 |
| FruR | 104-121 | 6.005 |
| DcuR | 132-186 | 5.729 |
| NorR | 144-160 | 5.474 |
| LacI | 23-43 | 5.300 |
| GlpR | 349-368 | 5.107 |