| TF name | Position | PWM scan score |
| ArcA | 241-301 | 28.284 |
| OmpR | 231-250 | 19.456 |
| Mlc | 298-320 | 19.205 |
| NagC | 299-321 | 18.416 |
| SoxS | 257-274 | 17.828 |
| CysB | 343-384 | 17.236 |
| OxyR | 282-326 | 16.956 |
| AgaR | 294-317 | 16.140 |
| PhoB | 98-117 | 16.126 |
| CytR | 208-247 | 16.081 |
| TyrR | 114-135 | 15.896 |
| GcvA | 226-254 | 15.141 |
| ArgR | 227-242 | 15.122 |
| ArgP | 312-324 | 14.749 |
| Fis | 235-255 | 14.658 |
| FNR | 287-308 | 14.343 |
| DeoR | 314-329 | 14.330 |
| MarA | 255-275 | 14.025 |
| AraC | 225-242 | 13.015 |
| IHF | 149-161 | 12.825 |
| H-NS | 232-246 | 12.564 |
| PhoP | 329-345 | 12.193 |
| CRP | 299-320 | 11.996 |
| Lrp | 238-249 | 11.307 |
| Ada | 296-323 | 11.200 |
| CpxR | 314-328 | 11.199 |
| UxuR | 283-300 | 10.995 |
| MelR | 333-350 | 10.956 |
| ModE | 297-323 | 10.498 |
| UlaR | 293-312 | 10.470 |
| RcsB | 291-304 | 9.929 |
| GadE | 211-230 | 9.770 |
| Rob | 316-336 | 9.664 |
| LexA | 71-90 | 9.660 |
| NarL | 197-203 | 9.087 |
| GlpR | 214-233 | 9.085 |
| FruR | 259-276 | 8.962 |
| Fur | 271-285 | 8.836 |
| MetR | 98-121 | 8.649 |
| Nac | 21-35 | 8.610 |
| DcuR | 268-322 | 8.388 |
| IdnR | 176-191 | 8.253 |
| PspF | 369-385 | 7.576 |
| XylR | 44-61 | 7.425 |
| TorR | 72-81 | 7.421 |
| DnaA | 140-148 | 7.218 |
| NtrC | 293-309 | 6.639 |
| TrpR | 284-301 | 6.480 |
| LacI | 312-332 | 6.180 |
| PurR | 117-132 | 6.168 |
| NarP | 202-208 | 6.110 |
| GalR | 207-222 | 6.100 |
| GalS | 207-222 | 6.100 |
| MalT | 343-352 | 6.014 |
| GntR | 118-137 | 5.913 |
| RhaS | 215-231 | 5.886 |
| NorR | 295-311 | 5.746 |
| FadR | 182-198 | 5.668 |