| TF name | Position | PWM scan score |
| ArcA | 338-398 | 29.988 |
| AgaR | 350-373 | 21.366 |
| CysB | 353-394 | 18.354 |
| OmpR | 380-399 | 16.342 |
| GadE | 310-329 | 15.786 |
| ArgR | 198-213 | 14.960 |
| DeoR | 181-196 | 14.752 |
| CytR | 319-358 | 13.973 |
| Fis | 244-264 | 13.731 |
| DcuR | 32-86 | 12.920 |
| AraC | 151-168 | 12.172 |
| FNR | 13-34 | 11.827 |
| H-NS | 252-266 | 11.727 |
| SoxS | 376-393 | 11.619 |
| Ada | 339-366 | 11.388 |
| NorR | 357-373 | 11.370 |
| PhoB | 319-338 | 11.364 |
| ArgP | 225-237 | 11.360 |
| Rob | 307-327 | 11.261 |
| MarA | 211-231 | 11.214 |
| GcvA | 354-382 | 10.967 |
| RhaS | 97-113 | 10.900 |
| Mlc | 156-178 | 10.686 |
| TrpR | 25-42 | 10.607 |
| NagC | 356-378 | 10.606 |
| TyrR | 6-27 | 10.572 |
| UlaR | 148-167 | 10.432 |
| PhoP | 313-329 | 10.326 |
| OxyR | 348-392 | 10.068 |
| IdnR | 375-390 | 10.026 |
| Lrp | 351-362 | 9.950 |
| XylR | 152-169 | 9.782 |
| IHF | 226-238 | 9.697 |
| RcsB | 199-212 | 9.651 |
| TorR | 364-373 | 9.464 |
| Nac | 164-178 | 9.403 |
| GalR | 378-393 | 8.830 |
| GalS | 378-393 | 8.830 |
| CRP | 374-395 | 8.592 |
| NarP | 7-13 | 8.496 |
| NtrC | 261-277 | 8.385 |
| PurR | 299-314 | 8.114 |
| PspF | 171-187 | 8.026 |
| GntR | 380-399 | 8.006 |
| NarL | 366-372 | 7.927 |
| DnaA | 256-264 | 7.926 |
| ModE | 49-75 | 7.911 |
| MetR | 143-166 | 7.911 |
| CpxR | 378-392 | 7.724 |
| FruR | 172-189 | 6.859 |
| MalT | 10-19 | 6.710 |
| FadR | 170-186 | 6.694 |
| LacI | 206-226 | 6.660 |
| GlpR | 366-385 | 6.440 |
| MetJ | 304-311 | 6.375 |
| FhlA | 270-309 | 5.651 |
| Fur | 323-337 | 5.464 |
| CaiF | 120-164 | 5.405 |
| LexA | 248-267 | 5.300 |
| MelR | 382-399 | 5.150 |