| TF name | Position | PWM scan score |
| ArcA | 9-69 | 25.891 |
| CytR | 274-313 | 22.094 |
| PhoP | 107-123 | 20.562 |
| OmpR | 31-50 | 16.569 |
| Nac | 31-45 | 15.986 |
| DcuR | 251-305 | 15.671 |
| CysB | 238-279 | 15.663 |
| GadE | 101-120 | 15.612 |
| LexA | 273-292 | 15.514 |
| CRP | 6-27 | 15.294 |
| NagC | 237-259 | 14.199 |
| FNR | 9-30 | 13.712 |
| CpxR | 109-123 | 13.407 |
| DeoR | 238-253 | 13.329 |
| OxyR | 255-299 | 12.823 |
| DnaA | 279-287 | 12.693 |
| H-NS | 80-94 | 12.571 |
| ArgP | 34-46 | 12.092 |
| IHF | 15-27 | 12.066 |
| AraC | 9-26 | 12.022 |
| TorR | 149-158 | 11.808 |
| TyrR | 279-300 | 11.774 |
| UxuR | 251-268 | 11.512 |
| Fis | 103-123 | 11.113 |
| Fur | 36-50 | 11.079 |
| UlaR | 8-27 | 10.903 |
| GcvA | 265-293 | 10.516 |
| MarA | 270-290 | 10.492 |
| Lrp | 33-44 | 10.462 |
| Rob | 36-56 | 10.340 |
| AgaR | 262-285 | 10.249 |
| GlpR | 82-101 | 10.002 |
| Ada | 13-40 | 9.971 |
| PhoB | 171-190 | 9.663 |
| CaiF | 236-280 | 9.649 |
| Mlc | 20-42 | 9.485 |
| PspF | 251-267 | 9.480 |
| ArgR | 273-288 | 9.396 |
| NorR | 245-261 | 9.248 |
| MelR | 267-284 | 8.813 |
| SoxS | 100-117 | 8.766 |
| ModE | 260-286 | 8.557 |
| NarL | 279-285 | 8.131 |
| RcsB | 15-28 | 8.124 |
| IdnR | 171-186 | 7.998 |
| MalT | 126-135 | 7.806 |
| MetJ | 291-298 | 7.044 |
| XylR | 353-370 | 7.011 |
| RhaS | 244-260 | 6.479 |
| FhlA | 240-279 | 6.385 |
| FruR | 174-191 | 6.325 |
| GntR | 269-288 | 6.007 |
| NarP | 177-183 | 5.342 |