| TF name | Position | PWM scan score |
| ArcA | 131-191 | 29.385 |
| OxyR | 205-249 | 24.183 |
| DcuR | 325-379 | 22.483 |
| CytR | 339-378 | 20.944 |
| Mlc | 371-393 | 20.619 |
| CysB | 337-378 | 20.051 |
| NagC | 334-356 | 18.570 |
| AgaR | 369-392 | 16.112 |
| Fis | 344-364 | 15.958 |
| OmpR | 229-248 | 15.175 |
| FNR | 156-177 | 14.468 |
| Nac | 332-346 | 14.450 |
| GadE | 331-350 | 14.354 |
| CRP | 369-390 | 14.117 |
| GcvA | 116-144 | 13.196 |
| CpxR | 214-228 | 12.850 |
| MarA | 233-253 | 12.773 |
| IHF | 165-177 | 12.753 |
| PhoP | 338-354 | 12.623 |
| H-NS | 330-344 | 12.132 |
| Lrp | 109-120 | 12.117 |
| ArgP | 243-255 | 12.103 |
| PhoB | 209-228 | 12.081 |
| Rob | 9-29 | 12.072 |
| MetR | 332-355 | 12.029 |
| LacI | 352-372 | 12.022 |
| Ada | 117-144 | 11.811 |
| UlaR | 127-146 | 11.367 |
| DeoR | 227-242 | 11.096 |
| TrpR | 330-347 | 11.062 |
| GlpR | 353-372 | 10.782 |
| LexA | 348-367 | 10.766 |
| Fur | 369-383 | 10.573 |
| UxuR | 344-361 | 10.384 |
| NtrC | 256-272 | 9.719 |
| TyrR | 290-311 | 9.468 |
| MetJ | 131-138 | 9.382 |
| IdnR | 102-117 | 9.358 |
| NarL | 371-377 | 9.333 |
| GntR | 38-57 | 9.288 |
| SoxS | 235-252 | 9.143 |
| PspF | 213-229 | 9.097 |
| NorR | 11-27 | 8.882 |
| RcsB | 107-120 | 8.707 |
| ModE | 319-345 | 8.540 |
| XylR | 64-81 | 8.281 |
| ArgR | 335-350 | 8.211 |
| TorR | 381-390 | 8.078 |
| NarP | 203-209 | 7.965 |
| DnaA | 276-284 | 7.751 |
| AraC | 370-387 | 7.628 |
| PurR | 184-199 | 6.981 |
| MelR | 101-118 | 6.399 |
| GalS | 104-119 | 6.180 |
| GalR | 104-119 | 6.180 |
| RhaS | 300-316 | 5.712 |
| MalT | 348-357 | 5.303 |
| FruR | 38-55 | 5.182 |
| FadR | 150-166 | 5.065 |