| TF name | Position | PWM scan score |
| ArcA | 8-68 | 32.425 |
| Mlc | 217-239 | 20.679 |
| CysB | 125-166 | 20.515 |
| OxyR | 317-361 | 20.256 |
| H-NS | 354-368 | 19.300 |
| CytR | 353-392 | 18.102 |
| GcvA | 348-376 | 16.577 |
| OmpR | 293-312 | 16.217 |
| FNR | 136-157 | 15.475 |
| IHF | 351-363 | 14.807 |
| Rob | 76-96 | 14.658 |
| DcuR | 314-368 | 14.616 |
| XylR | 254-271 | 14.302 |
| ModE | 344-370 | 14.264 |
| Nac | 342-356 | 14.061 |
| GadE | 339-358 | 14.025 |
| Fis | 55-75 | 13.990 |
| CRP | 358-379 | 13.968 |
| RcsB | 358-371 | 13.588 |
| AgaR | 204-227 | 13.276 |
| PspF | 206-222 | 13.022 |
| MetR | 246-269 | 12.915 |
| TyrR | 1-22 | 12.901 |
| MarA | 249-269 | 12.653 |
| PhoP | 345-361 | 12.626 |
| PhoB | 160-179 | 12.338 |
| SoxS | 345-362 | 12.225 |
| Fur | 383-397 | 12.209 |
| ArgP | 46-58 | 12.118 |
| NtrC | 369-385 | 11.942 |
| MelR | 28-45 | 11.559 |
| CpxR | 352-366 | 11.440 |
| GntR | 218-237 | 11.236 |
| Lrp | 33-44 | 11.222 |
| NagC | 219-241 | 11.195 |
| UxuR | 247-264 | 11.176 |
| TorR | 343-352 | 11.140 |
| DeoR | 85-100 | 10.523 |
| ArgR | 96-111 | 10.461 |
| UlaR | 204-223 | 10.313 |
| NorR | 259-275 | 10.037 |
| FruR | 39-56 | 9.882 |
| DnaA | 342-350 | 9.821 |
| GlpR | 144-163 | 9.357 |
| NarL | 208-214 | 9.197 |
| AraC | 31-48 | 9.153 |
| Ada | 240-267 | 9.152 |
| MetJ | 132-139 | 8.499 |
| LacI | 338-358 | 8.245 |
| PurR | 85-100 | 8.208 |
| FadR | 353-369 | 8.122 |
| FhlA | 104-143 | 7.946 |
| IdnR | 54-69 | 7.884 |
| NarP | 340-346 | 7.762 |
| GalS | 38-53 | 7.601 |
| GalR | 38-53 | 7.601 |
| TrpR | 379-396 | 6.837 |
| RhaS | 12-28 | 6.774 |
| CaiF | 330-374 | 6.180 |