| TF name | Position | PWM scan score |
| ArcA | 143-203 | 32.655 |
| Mlc | 349-371 | 21.462 |
| OxyR | 106-150 | 21.032 |
| CysB | 10-51 | 19.516 |
| DcuR | 5-59 | 18.773 |
| AgaR | 142-165 | 17.513 |
| FNR | 253-274 | 16.931 |
| GcvA | 347-375 | 16.901 |
| OmpR | 130-149 | 16.605 |
| CytR | 317-356 | 16.466 |
| ArgP | 184-196 | 16.367 |
| PhoP | 360-376 | 16.362 |
| Fis | 356-376 | 16.025 |
| GntR | 163-182 | 15.343 |
| Fur | 356-370 | 15.293 |
| H-NS | 183-197 | 15.105 |
| UlaR | 39-58 | 14.976 |
| IHF | 138-150 | 14.566 |
| Ada | 142-169 | 14.249 |
| RcsB | 41-54 | 13.401 |
| CRP | 183-204 | 13.379 |
| TyrR | 135-156 | 12.931 |
| NagC | 170-192 | 12.891 |
| Rob | 80-100 | 12.663 |
| ArgR | 245-260 | 12.584 |
| CpxR | 89-103 | 12.497 |
| PhoB | 131-150 | 12.332 |
| ModE | 9-35 | 12.048 |
| TrpR | 68-85 | 11.942 |
| Nac | 47-61 | 11.715 |
| MarA | 196-216 | 11.552 |
| TorR | 313-322 | 11.414 |
| Lrp | 388-399 | 10.762 |
| GlpR | 191-210 | 10.697 |
| PurR | 139-154 | 10.425 |
| NarL | 60-66 | 10.241 |
| MelR | 183-200 | 10.146 |
| AraC | 55-72 | 10.009 |
| PspF | 159-175 | 9.980 |
| MetR | 171-194 | 9.592 |
| XylR | 137-154 | 9.399 |
| FadR | 119-135 | 9.212 |
| IdnR | 260-275 | 9.143 |
| GadE | 48-67 | 8.995 |
| NorR | 13-29 | 8.976 |
| SoxS | 350-367 | 8.855 |
| NtrC | 34-50 | 8.833 |
| NarP | 356-362 | 8.575 |
| DnaA | 53-61 | 8.323 |
| DeoR | 59-74 | 8.231 |
| LacI | 48-68 | 8.077 |
| GalS | 139-154 | 7.374 |
| GalR | 139-154 | 7.374 |
| MetJ | 6-13 | 7.082 |
| FruR | 186-203 | 6.691 |
| UxuR | 62-79 | 6.093 |
| MalT | 294-303 | 5.944 |