| TF name | Position | PWM scan score |
| ArcA | 330-390 | 28.032 |
| CysB | 335-376 | 23.115 |
| OxyR | 284-328 | 19.201 |
| OmpR | 351-370 | 18.789 |
| CytR | 28-67 | 16.473 |
| PhoB | 352-371 | 15.716 |
| CRP | 353-374 | 15.702 |
| PhoP | 352-368 | 15.622 |
| GlpR | 127-146 | 15.361 |
| GadE | 46-65 | 15.296 |
| ArgP | 360-372 | 14.789 |
| ModE | 336-362 | 14.174 |
| Ada | 338-365 | 14.101 |
| IdnR | 348-363 | 13.951 |
| IHF | 336-348 | 13.946 |
| CpxR | 337-351 | 13.825 |
| TyrR | 355-376 | 13.482 |
| MetR | 308-331 | 13.103 |
| FNR | 356-377 | 12.827 |
| Rob | 359-379 | 12.376 |
| AgaR | 340-363 | 12.314 |
| Mlc | 333-355 | 12.307 |
| GalR | 223-238 | 11.955 |
| GalS | 223-238 | 11.955 |
| H-NS | 340-354 | 11.341 |
| DeoR | 357-372 | 11.230 |
| Fis | 353-373 | 10.181 |
| XylR | 284-301 | 10.131 |
| Nac | 302-316 | 10.005 |
| Lrp | 353-364 | 9.807 |
| NagC | 304-326 | 9.719 |
| DcuR | 293-347 | 9.684 |
| UlaR | 268-287 | 9.505 |
| Fur | 356-370 | 9.171 |
| TorR | 65-74 | 9.091 |
| FruR | 223-240 | 8.826 |
| MetJ | 295-302 | 8.762 |
| RcsB | 234-247 | 8.432 |
| DnaA | 293-301 | 8.264 |
| AraC | 345-362 | 8.148 |
| MarA | 350-370 | 7.649 |
| SoxS | 310-327 | 7.526 |
| PspF | 310-326 | 7.489 |
| LacI | 138-158 | 7.110 |
| LexA | 64-83 | 7.086 |
| NarL | 290-296 | 6.953 |
| MelR | 314-331 | 6.882 |
| GcvA | 344-372 | 6.808 |
| FhlA | 30-69 | 6.675 |
| CaiF | 306-350 | 6.429 |
| NorR | 327-343 | 6.196 |
| GntR | 120-139 | 6.142 |
| ArgR | 373-388 | 6.114 |
| NarP | 362-368 | 5.708 |
| FadR | 202-218 | 5.378 |
| RhaS | 63-79 | 5.178 |