| TF name | Position | PWM scan score |
| ArcA | 305-365 | 21.847 |
| AgaR | 127-150 | 20.941 |
| MetR | 36-59 | 18.328 |
| FNR | 317-338 | 16.799 |
| CpxR | 18-32 | 16.694 |
| Mlc | 119-141 | 16.506 |
| XylR | 136-153 | 16.461 |
| Fur | 128-142 | 15.348 |
| Fis | 317-337 | 14.813 |
| PhoP | 6-22 | 14.723 |
| GadE | 322-341 | 14.514 |
| CytR | 359-398 | 14.345 |
| OmpR | 318-337 | 13.896 |
| OxyR | 101-145 | 13.825 |
| CRP | 314-335 | 13.791 |
| NagC | 325-347 | 13.131 |
| ArgP | 180-192 | 12.734 |
| Lrp | 131-142 | 12.635 |
| LacI | 75-95 | 12.576 |
| H-NS | 125-139 | 12.047 |
| IHF | 134-146 | 11.803 |
| SoxS | 271-288 | 11.541 |
| GlpR | 316-335 | 11.337 |
| RcsB | 132-145 | 10.996 |
| Rob | 105-125 | 10.965 |
| CysB | 305-346 | 10.917 |
| DeoR | 248-263 | 10.837 |
| IdnR | 317-332 | 10.748 |
| Nac | 349-363 | 10.671 |
| GcvA | 313-341 | 10.467 |
| PhoB | 66-85 | 10.348 |
| ArgR | 318-333 | 9.967 |
| ModE | 5-31 | 9.855 |
| TyrR | 175-196 | 9.663 |
| Ada | 44-71 | 9.595 |
| UlaR | 8-27 | 9.587 |
| NarL | 178-184 | 9.444 |
| PspF | 134-150 | 9.443 |
| LexA | 321-340 | 8.759 |
| MarA | 254-274 | 8.677 |
| DcuR | 90-144 | 8.250 |
| FruR | 26-43 | 7.701 |
| TorR | 77-86 | 7.696 |
| NarP | 60-66 | 7.347 |
| MelR | 204-221 | 6.944 |
| PurR | 155-170 | 6.837 |
| DnaA | 18-26 | 6.778 |
| AraC | 308-325 | 6.709 |
| GalR | 267-282 | 6.677 |
| GalS | 267-282 | 6.677 |
| FhlA | 315-354 | 6.617 |
| MalT | 90-99 | 6.582 |
| RhaS | 154-170 | 6.365 |
| NorR | 49-65 | 5.746 |
| MetJ | 80-87 | 5.552 |
| UxuR | 2-19 | 5.304 |
| FadR | 110-126 | 5.198 |
| GntR | 317-336 | 5.094 |