| TF name | Position | PWM scan score |
| ArcA | 299-359 | 19.116 |
| MetR | 110-133 | 19.080 |
| CytR | 358-397 | 16.970 |
| FNR | 289-310 | 15.725 |
| UlaR | 368-387 | 14.597 |
| Nac | 123-137 | 13.924 |
| GalS | 33-48 | 13.872 |
| GalR | 33-48 | 13.872 |
| Mlc | 313-335 | 13.683 |
| CysB | 85-126 | 13.582 |
| AgaR | 300-323 | 13.470 |
| IHF | 125-137 | 13.393 |
| OxyR | 339-383 | 12.861 |
| CRP | 299-320 | 12.840 |
| LacI | 52-72 | 12.767 |
| OmpR | 376-395 | 12.750 |
| RcsB | 354-367 | 12.524 |
| H-NS | 355-369 | 12.353 |
| GlpR | 91-110 | 12.134 |
| SoxS | 87-104 | 12.120 |
| AraC | 257-274 | 11.738 |
| Fur | 74-88 | 11.243 |
| Ada | 34-61 | 11.109 |
| PhoB | 330-349 | 10.884 |
| Fis | 111-131 | 10.855 |
| PhoP | 91-107 | 10.823 |
| Lrp | 118-129 | 10.796 |
| GntR | 63-82 | 10.328 |
| NorR | 124-140 | 10.309 |
| ArgR | 117-132 | 10.195 |
| FhlA | 62-101 | 10.082 |
| UxuR | 112-129 | 10.028 |
| GadE | 178-197 | 9.642 |
| ModE | 227-253 | 9.404 |
| MetJ | 98-105 | 9.382 |
| MarA | 208-228 | 9.366 |
| FadR | 355-371 | 9.340 |
| ArgP | 204-216 | 9.302 |
| NagC | 288-310 | 9.277 |
| CpxR | 88-102 | 9.162 |
| GcvA | 83-111 | 8.671 |
| IdnR | 354-369 | 8.599 |
| PurR | 33-48 | 8.403 |
| XylR | 373-390 | 8.349 |
| NarL | 218-224 | 8.290 |
| TorR | 124-133 | 8.217 |
| Rob | 197-217 | 8.069 |
| TyrR | 309-330 | 8.021 |
| DnaA | 321-329 | 7.721 |
| MelR | 119-136 | 7.570 |
| DeoR | 115-130 | 7.160 |
| NarP | 11-17 | 6.860 |
| PspF | 269-285 | 6.609 |
| FruR | 77-94 | 6.385 |
| MalT | 241-250 | 6.056 |
| LexA | 324-343 | 5.420 |
| NtrC | 65-81 | 5.068 |