| TF name | Position | PWM scan score |
| ArcA | 164-224 | 33.988 |
| CysB | 162-203 | 25.937 |
| CytR | 128-167 | 23.983 |
| OxyR | 95-139 | 20.205 |
| AgaR | 129-152 | 19.645 |
| GadE | 251-270 | 19.442 |
| FNR | 207-228 | 17.928 |
| NagC | 248-270 | 17.794 |
| MarA | 2-22 | 17.340 |
| TyrR | 326-347 | 17.310 |
| CRP | 152-173 | 16.961 |
| AraC | 352-369 | 16.671 |
| RcsB | 358-371 | 16.669 |
| MetR | 331-354 | 16.643 |
| SoxS | 99-116 | 15.799 |
| DcuR | 158-212 | 15.661 |
| Fur | 196-210 | 15.625 |
| Ada | 148-175 | 15.427 |
| GcvA | 168-196 | 15.240 |
| PhoB | 310-329 | 15.234 |
| OmpR | 172-191 | 15.175 |
| FruR | 317-334 | 14.944 |
| IHF | 277-289 | 14.935 |
| ModE | 349-375 | 14.924 |
| H-NS | 1-15 | 14.803 |
| Nac | 194-208 | 14.469 |
| DeoR | 156-171 | 13.169 |
| Mlc | 179-201 | 12.829 |
| Fis | 202-222 | 12.818 |
| ArgR | 316-331 | 12.671 |
| NorR | 251-267 | 12.545 |
| GntR | 361-380 | 11.878 |
| XylR | 246-263 | 11.642 |
| CpxR | 304-318 | 11.306 |
| Lrp | 160-171 | 11.173 |
| UlaR | 233-252 | 10.609 |
| GlpR | 1-20 | 10.459 |
| PspF | 183-199 | 10.175 |
| PhoP | 314-330 | 10.087 |
| IdnR | 111-126 | 10.026 |
| PurR | 83-98 | 9.992 |
| MelR | 357-374 | 9.523 |
| TorR | 256-265 | 9.476 |
| CaiF | 354-398 | 9.406 |
| NarL | 365-371 | 9.333 |
| UxuR | 203-220 | 9.296 |
| LexA | 178-197 | 8.857 |
| ArgP | 331-343 | 8.855 |
| FhlA | 252-291 | 8.786 |
| MetJ | 182-189 | 8.430 |
| DnaA | 209-217 | 8.160 |
| NarP | 23-29 | 7.828 |
| GalR | 50-65 | 7.185 |
| GalS | 50-65 | 7.185 |
| NtrC | 304-320 | 7.126 |
| Rob | 368-388 | 7.021 |
| FadR | 117-133 | 6.686 |
| MalT | 307-316 | 6.461 |
| RhaS | 352-368 | 6.227 |
| LacI | 220-240 | 5.710 |