| TF name | Position | PWM scan score |
| ArcA | 218-278 | 33.969 |
| CysB | 272-313 | 24.891 |
| OxyR | 180-224 | 22.783 |
| UlaR | 51-70 | 20.647 |
| CytR | 140-179 | 17.116 |
| DcuR | 212-266 | 17.081 |
| FNR | 284-305 | 16.743 |
| UxuR | 163-180 | 16.461 |
| Mlc | 5-27 | 16.073 |
| MetR | 261-284 | 15.966 |
| NagC | 110-132 | 15.783 |
| RcsB | 293-306 | 15.474 |
| FhlA | 299-338 | 15.152 |
| AgaR | 46-69 | 15.144 |
| H-NS | 369-383 | 14.978 |
| Fur | 176-190 | 14.967 |
| OmpR | 326-345 | 14.731 |
| Ada | 170-197 | 14.695 |
| GadE | 369-388 | 14.526 |
| CpxR | 177-191 | 13.981 |
| GntR | 297-316 | 13.775 |
| CRP | 257-278 | 13.644 |
| Nac | 285-299 | 13.484 |
| IHF | 293-305 | 13.465 |
| PhoB | 13-32 | 12.566 |
| MelR | 221-238 | 12.256 |
| Rob | 58-78 | 12.185 |
| TyrR | 365-386 | 12.110 |
| AraC | 306-323 | 12.061 |
| GcvA | 367-395 | 11.743 |
| DeoR | 237-252 | 11.601 |
| ModE | 147-173 | 11.115 |
| Lrp | 292-303 | 11.088 |
| SoxS | 152-169 | 11.031 |
| DnaA | 304-312 | 10.924 |
| GlpR | 295-314 | 10.725 |
| LexA | 141-160 | 10.626 |
| Fis | 211-231 | 10.370 |
| PspF | 173-189 | 10.309 |
| GalR | 323-338 | 10.147 |
| GalS | 323-338 | 10.147 |
| NarL | 204-210 | 10.130 |
| PhoP | 8-24 | 10.129 |
| PurR | 323-338 | 10.037 |
| IdnR | 334-349 | 9.848 |
| TorR | 146-155 | 9.840 |
| FruR | 108-125 | 9.532 |
| ArgP | 220-232 | 9.099 |
| XylR | 137-154 | 8.997 |
| MarA | 355-375 | 8.542 |
| NarP | 170-176 | 8.509 |
| NorR | 35-51 | 8.160 |
| MalT | 75-84 | 7.895 |
| MetJ | 333-340 | 7.871 |
| FadR | 38-54 | 7.229 |
| ArgR | 246-261 | 7.226 |
| NtrC | 45-61 | 7.047 |
| RhaS | 203-219 | 6.907 |
| TrpR | 142-159 | 6.638 |
| LacI | 26-46 | 6.029 |