| TF name | Position | PWM scan score |
| ArcA | 260-320 | 30.021 |
| AgaR | 360-383 | 21.483 |
| CytR | 268-307 | 21.296 |
| CRP | 362-383 | 20.512 |
| OmpR | 357-376 | 18.952 |
| DcuR | 206-260 | 18.665 |
| OxyR | 272-316 | 17.717 |
| CysB | 245-286 | 17.081 |
| Mlc | 361-383 | 16.539 |
| RcsB | 368-381 | 16.125 |
| Fur | 281-295 | 15.839 |
| XylR | 353-370 | 15.064 |
| ArgR | 268-283 | 14.887 |
| GcvA | 271-299 | 14.478 |
| UlaR | 360-379 | 14.371 |
| Ada | 341-368 | 14.084 |
| FNR | 358-379 | 13.947 |
| TyrR | 361-382 | 13.557 |
| H-NS | 271-285 | 13.535 |
| Fis | 262-282 | 13.336 |
| IHF | 290-302 | 13.062 |
| SoxS | 278-295 | 12.960 |
| NagC | 293-315 | 12.617 |
| Lrp | 373-384 | 12.315 |
| CpxR | 365-379 | 11.834 |
| IdnR | 57-72 | 11.453 |
| GadE | 357-376 | 11.367 |
| ArgP | 372-384 | 11.357 |
| MelR | 271-288 | 10.944 |
| MarA | 361-381 | 10.850 |
| GntR | 100-119 | 10.849 |
| UxuR | 212-229 | 10.548 |
| Nac | 369-383 | 10.499 |
| PspF | 287-303 | 10.084 |
| FhlA | 255-294 | 9.816 |
| MetJ | 162-169 | 9.451 |
| NarL | 356-362 | 9.444 |
| TorR | 188-197 | 9.392 |
| PhoB | 347-366 | 9.333 |
| FruR | 291-308 | 9.260 |
| DeoR | 374-389 | 9.206 |
| PhoP | 252-268 | 9.190 |
| Rob | 120-140 | 9.189 |
| GlpR | 271-290 | 8.415 |
| LexA | 313-332 | 8.262 |
| ModE | 272-298 | 8.063 |
| GalR | 82-97 | 7.945 |
| GalS | 82-97 | 7.945 |
| MetR | 359-382 | 7.746 |
| DnaA | 187-195 | 7.194 |
| NarP | 287-293 | 6.879 |
| NtrC | 266-282 | 6.839 |
| AraC | 166-183 | 6.834 |
| NorR | 364-380 | 6.374 |
| FadR | 118-134 | 5.483 |