| TF name | Position | PWM scan score |
| ArcA | 332-392 | 23.727 |
| CysB | 306-347 | 22.433 |
| TyrR | 375-396 | 16.102 |
| Fur | 349-363 | 16.001 |
| Nac | 336-350 | 15.354 |
| FNR | 81-102 | 14.780 |
| SoxS | 89-106 | 14.761 |
| OmpR | 81-100 | 14.006 |
| H-NS | 308-322 | 13.955 |
| NagC | 335-357 | 13.644 |
| Rob | 168-188 | 13.206 |
| IHF | 373-385 | 13.066 |
| Fis | 87-107 | 12.896 |
| AgaR | 213-236 | 12.753 |
| TorR | 273-282 | 12.491 |
| RcsB | 181-194 | 11.941 |
| NorR | 272-288 | 11.823 |
| CytR | 307-346 | 11.426 |
| CRP | 218-239 | 11.343 |
| MalT | 24-33 | 11.020 |
| Mlc | 251-273 | 10.855 |
| OxyR | 315-359 | 10.764 |
| GadE | 305-324 | 10.419 |
| Lrp | 305-316 | 10.358 |
| GcvA | 216-244 | 10.290 |
| ArgP | 97-109 | 10.282 |
| IdnR | 263-278 | 10.103 |
| PhoB | 93-112 | 10.022 |
| MarA | 87-107 | 9.922 |
| ArgR | 302-317 | 9.921 |
| AraC | 300-317 | 9.702 |
| DcuR | 206-260 | 9.194 |
| PhoP | 31-47 | 9.102 |
| GlpR | 86-105 | 8.737 |
| PspF | 346-362 | 8.570 |
| MetR | 235-258 | 8.257 |
| XylR | 302-319 | 8.114 |
| FadR | 344-360 | 8.075 |
| MetJ | 315-322 | 7.925 |
| UlaR | 174-193 | 7.920 |
| CpxR | 265-279 | 7.597 |
| DnaA | 10-18 | 7.526 |
| Ada | 214-241 | 7.033 |
| NarL | 339-345 | 6.942 |
| NtrC | 328-344 | 6.935 |
| RhaS | 338-354 | 6.745 |
| ModE | 310-336 | 6.735 |
| CaiF | 74-118 | 6.686 |
| NarP | 309-315 | 6.657 |
| PurR | 196-211 | 6.217 |
| UxuR | 338-355 | 6.167 |
| FhlA | 186-225 | 6.166 |
| MelR | 346-363 | 5.754 |
| TrpR | 336-353 | 5.702 |
| GalR | 167-182 | 5.246 |
| GalS | 167-182 | 5.246 |
| LacI | 80-100 | 5.230 |
| DeoR | 338-353 | 5.044 |