| TF name | Position | PWM scan score |
| ArcA | 312-372 | 24.707 |
| Mlc | 152-174 | 19.024 |
| NagC | 154-176 | 15.247 |
| FNR | 159-180 | 15.107 |
| GadE | 155-174 | 14.939 |
| AraC | 321-338 | 14.322 |
| CRP | 78-99 | 14.098 |
| IHF | 168-180 | 13.555 |
| MetJ | 366-373 | 13.538 |
| NorR | 376-392 | 13.250 |
| RcsB | 73-86 | 13.051 |
| PspF | 140-156 | 11.964 |
| TyrR | 80-101 | 11.624 |
| UxuR | 293-310 | 11.334 |
| CytR | 294-333 | 11.250 |
| OmpR | 155-174 | 11.082 |
| H-NS | 192-206 | 10.900 |
| CysB | 310-351 | 10.855 |
| GlpR | 56-75 | 10.712 |
| PhoP | 314-330 | 10.650 |
| Nac | 157-171 | 10.501 |
| UlaR | 336-355 | 10.501 |
| Fis | 366-386 | 9.803 |
| TorR | 161-170 | 9.284 |
| Lrp | 162-173 | 9.209 |
| CpxR | 82-96 | 9.061 |
| RhaS | 330-346 | 8.803 |
| AgaR | 166-189 | 8.656 |
| DeoR | 324-339 | 8.624 |
| NarP | 138-144 | 8.594 |
| PhoB | 367-386 | 8.553 |
| IdnR | 367-382 | 8.515 |
| DcuR | 129-183 | 8.250 |
| NarL | 195-201 | 8.154 |
| MarA | 184-204 | 8.148 |
| MetR | 157-180 | 7.748 |
| Rob | 360-380 | 7.688 |
| Ada | 93-120 | 7.624 |
| SoxS | 279-296 | 7.605 |
| MelR | 165-182 | 7.335 |
| ArgP | 296-308 | 7.247 |
| GcvA | 66-94 | 7.100 |
| OxyR | 157-201 | 7.090 |
| LacI | 152-172 | 6.835 |
| GalR | 376-391 | 6.328 |
| GalS | 376-391 | 6.328 |
| MalT | 351-360 | 6.202 |
| GntR | 150-169 | 5.996 |
| ArgR | 75-90 | 5.987 |
| ModE | 285-311 | 5.947 |
| Fur | 330-344 | 5.876 |
| XylR | 151-168 | 5.830 |
| DnaA | 45-53 | 5.491 |
| NtrC | 270-286 | 5.236 |