| TF name | Position | PWM scan score |
| ArcA | 235-295 | 25.457 |
| OxyR | 258-302 | 22.635 |
| PhoP | 219-235 | 18.365 |
| OmpR | 275-294 | 17.685 |
| CysB | 241-282 | 17.461 |
| FNR | 330-351 | 16.366 |
| TyrR | 279-300 | 16.203 |
| NagC | 332-354 | 15.977 |
| AraC | 229-246 | 15.696 |
| GcvA | 272-300 | 14.655 |
| CRP | 237-258 | 14.633 |
| CytR | 142-181 | 13.953 |
| H-NS | 275-289 | 13.687 |
| AgaR | 117-140 | 13.436 |
| UlaR | 200-219 | 13.246 |
| MarA | 83-103 | 13.019 |
| RcsB | 232-245 | 12.904 |
| PhoB | 179-198 | 12.791 |
| ModE | 272-298 | 12.594 |
| IdnR | 278-293 | 12.524 |
| IHF | 156-168 | 12.255 |
| Fis | 71-91 | 12.132 |
| Nac | 370-384 | 12.122 |
| DcuR | 194-248 | 11.813 |
| XylR | 233-250 | 11.500 |
| Fur | 272-286 | 11.487 |
| TorR | 228-237 | 11.414 |
| DeoR | 187-202 | 11.020 |
| GadE | 332-351 | 10.945 |
| ArgR | 384-399 | 10.942 |
| Rob | 275-295 | 10.864 |
| Ada | 235-262 | 10.686 |
| Lrp | 175-186 | 10.450 |
| Mlc | 271-293 | 10.429 |
| ArgP | 383-395 | 10.349 |
| FadR | 179-195 | 10.133 |
| NarL | 92-98 | 9.994 |
| MetR | 182-205 | 9.824 |
| GntR | 235-254 | 9.704 |
| SoxS | 153-170 | 9.529 |
| GlpR | 329-348 | 9.439 |
| CpxR | 282-296 | 9.222 |
| PspF | 263-279 | 9.097 |
| NarP | 259-265 | 8.911 |
| UxuR | 91-108 | 8.500 |
| PurR | 323-338 | 8.417 |
| DnaA | 338-346 | 8.131 |
| LexA | 239-258 | 7.596 |
| GalR | 86-101 | 7.588 |
| GalS | 86-101 | 7.588 |
| NorR | 234-250 | 6.918 |
| RhaS | 337-353 | 6.404 |
| MetJ | 378-385 | 5.862 |
| MelR | 321-338 | 5.561 |