| TF name | Position | PWM scan score |
| ArcA | 262-322 | 31.526 |
| CysB | 254-295 | 25.310 |
| CytR | 337-376 | 21.852 |
| DcuR | 317-371 | 20.868 |
| CRP | 274-295 | 17.767 |
| Fur | 275-289 | 17.397 |
| MarA | 211-231 | 17.167 |
| FNR | 213-234 | 16.984 |
| GadE | 288-307 | 16.868 |
| OxyR | 221-265 | 16.314 |
| MetR | 273-296 | 16.275 |
| Mlc | 312-334 | 14.663 |
| GcvA | 297-325 | 14.383 |
| H-NS | 291-305 | 14.256 |
| PhoB | 370-389 | 14.194 |
| AgaR | 348-371 | 14.085 |
| CpxR | 258-272 | 14.005 |
| OmpR | 339-358 | 13.876 |
| Rob | 278-298 | 13.870 |
| PhoP | 279-295 | 13.818 |
| IHF | 346-358 | 13.551 |
| UlaR | 233-252 | 13.306 |
| MelR | 327-344 | 13.159 |
| Nac | 273-287 | 12.635 |
| Fis | 304-324 | 12.183 |
| ModE | 278-304 | 12.094 |
| GntR | 298-317 | 11.943 |
| SoxS | 323-340 | 11.877 |
| AraC | 374-391 | 11.829 |
| XylR | 363-380 | 11.436 |
| ArgP | 273-285 | 11.357 |
| GlpR | 71-90 | 11.189 |
| NagC | 353-375 | 11.165 |
| IdnR | 340-355 | 10.936 |
| RcsB | 381-394 | 10.538 |
| NarL | 143-149 | 10.130 |
| Lrp | 380-391 | 10.116 |
| Ada | 225-252 | 10.055 |
| TyrR | 343-364 | 9.967 |
| NorR | 349-365 | 9.859 |
| FruR | 223-240 | 9.483 |
| ArgR | 324-339 | 9.414 |
| DeoR | 248-263 | 9.365 |
| TrpR | 251-268 | 8.931 |
| LacI | 368-388 | 8.611 |
| RhaS | 142-158 | 8.559 |
| MetJ | 317-324 | 8.430 |
| FadR | 169-185 | 8.185 |
| PspF | 141-157 | 8.120 |
| TorR | 280-289 | 7.963 |
| LexA | 322-341 | 7.871 |
| NarP | 281-287 | 7.740 |
| UxuR | 61-78 | 6.979 |
| CaiF | 296-340 | 5.897 |
| GalR | 40-55 | 5.430 |
| GalS | 40-55 | 5.430 |