| TF name | Position | PWM scan score |
| FNR | 259-280 | 28.115 |
| ArcA | 155-215 | 23.948 |
| Fur | 184-198 | 21.431 |
| CRP | 256-277 | 21.065 |
| OxyR | 167-211 | 20.817 |
| NagC | 193-215 | 18.675 |
| AgaR | 256-279 | 18.053 |
| MarA | 228-248 | 16.647 |
| ArgR | 199-214 | 16.418 |
| OmpR | 255-274 | 15.936 |
| CysB | 245-286 | 15.685 |
| Fis | 196-216 | 15.259 |
| GadE | 171-190 | 14.836 |
| IHF | 268-280 | 14.613 |
| Ada | 256-283 | 13.913 |
| CytR | 159-198 | 13.718 |
| PhoP | 87-103 | 13.348 |
| MetR | 275-298 | 13.140 |
| NorR | 189-205 | 13.089 |
| H-NS | 205-219 | 13.086 |
| Lrp | 262-273 | 12.862 |
| ArgP | 122-134 | 12.827 |
| DeoR | 61-76 | 12.367 |
| UlaR | 193-212 | 12.282 |
| TorR | 262-271 | 12.278 |
| GcvA | 163-191 | 12.040 |
| Nac | 173-187 | 11.908 |
| UxuR | 133-150 | 11.730 |
| GlpR | 2-21 | 11.599 |
| RcsB | 269-282 | 11.361 |
| Rob | 187-207 | 11.030 |
| CpxR | 266-280 | 10.872 |
| PhoB | 107-126 | 10.825 |
| AraC | 199-216 | 9.946 |
| SoxS | 327-344 | 9.763 |
| TyrR | 167-188 | 9.752 |
| GntR | 34-53 | 9.391 |
| DcuR | 102-156 | 9.388 |
| ModE | 196-222 | 8.788 |
| Mlc | 186-208 | 8.785 |
| NarL | 209-215 | 8.681 |
| MelR | 254-271 | 8.495 |
| NtrC | 200-216 | 8.127 |
| NarP | 190-196 | 7.965 |
| CueR | 74-92 | 7.702 |
| LexA | 359-378 | 7.605 |
| XylR | 257-274 | 7.578 |
| PspF | 181-197 | 7.576 |
| GalS | 128-143 | 7.560 |
| GalR | 128-143 | 7.560 |
| MetJ | 385-392 | 7.386 |
| DnaA | 276-284 | 7.296 |
| IdnR | 82-97 | 7.011 |
| FruR | 252-269 | 6.943 |
| PurR | 288-303 | 6.475 |
| FadR | 213-229 | 6.163 |
| MalT | 145-154 | 5.985 |
| LacI | 143-163 | 5.596 |