| TF name | Position | PWM scan score |
| ArcA | 339-399 | 20.599 |
| GcvA | 332-360 | 14.527 |
| Fis | 344-364 | 14.266 |
| PhoB | 331-350 | 13.633 |
| CRP | 326-347 | 13.314 |
| LexA | 262-281 | 13.168 |
| MetR | 1-24 | 11.945 |
| CpxR | 377-391 | 11.741 |
| H-NS | 286-300 | 11.640 |
| Nac | 283-297 | 11.453 |
| DeoR | 138-153 | 11.177 |
| AgaR | 374-397 | 10.828 |
| ArgR | 347-362 | 10.498 |
| OmpR | 53-72 | 10.365 |
| CytR | 254-293 | 10.269 |
| GadE | 287-306 | 10.100 |
| Mlc | 48-70 | 10.082 |
| PhoP | 338-354 | 10.033 |
| NagC | 165-187 | 9.812 |
| Lrp | 284-295 | 9.788 |
| CysB | 258-299 | 9.779 |
| FNR | 281-302 | 9.402 |
| GlpR | 236-255 | 9.112 |
| Rob | 336-356 | 9.086 |
| ArgP | 1-13 | 8.948 |
| NarL | 286-292 | 8.932 |
| MarA | 232-252 | 8.833 |
| XylR | 378-395 | 8.554 |
| DnaA | 165-173 | 8.238 |
| MetJ | 281-288 | 7.986 |
| AraC | 99-116 | 7.891 |
| FadR | 295-311 | 7.849 |
| IHF | 376-388 | 7.779 |
| GntR | 49-68 | 7.653 |
| TyrR | 333-354 | 7.618 |
| RcsB | 380-393 | 7.412 |
| UxuR | 352-369 | 7.409 |
| ModE | 318-344 | 7.402 |
| MelR | 153-170 | 7.296 |
| SoxS | 52-69 | 7.227 |
| NarP | 306-312 | 7.078 |
| LacI | 136-156 | 6.727 |
| UlaR | 377-396 | 6.686 |
| FruR | 192-209 | 6.078 |
| GalR | 232-247 | 6.062 |
| GalS | 232-247 | 6.062 |
| RhaS | 28-44 | 6.053 |
| NorR | 338-354 | 6.035 |
| DcuR | 209-263 | 6.004 |
| PspF | 64-80 | 5.783 |
| MalT | 16-25 | 5.285 |
| Fur | 284-298 | 5.283 |