| TF name | Position | PWM scan score |
| ArcA | 286-346 | 35.161 |
| CytR | 294-333 | 27.795 |
| OxyR | 146-190 | 24.030 |
| CysB | 195-236 | 21.721 |
| OmpR | 92-111 | 19.618 |
| PhoP | 195-211 | 19.246 |
| CaiF | 100-144 | 17.974 |
| CRP | 169-190 | 16.666 |
| DcuR | 87-141 | 16.497 |
| GcvA | 321-349 | 16.322 |
| NagC | 330-352 | 16.160 |
| XylR | 90-107 | 16.071 |
| UlaR | 123-142 | 15.859 |
| GadE | 203-222 | 15.388 |
| AgaR | 105-128 | 15.168 |
| CpxR | 197-211 | 15.156 |
| PhoB | 114-133 | 14.957 |
| H-NS | 314-328 | 14.874 |
| Mlc | 308-330 | 14.860 |
| Rob | 187-207 | 14.718 |
| MarA | 184-204 | 14.706 |
| Fis | 336-356 | 14.534 |
| FNR | 199-220 | 14.466 |
| GlpR | 373-392 | 13.383 |
| DeoR | 77-92 | 13.121 |
| IHF | 127-139 | 12.933 |
| RcsB | 260-273 | 12.841 |
| ArgR | 322-337 | 12.665 |
| LexA | 54-73 | 12.642 |
| Fur | 172-186 | 12.449 |
| UxuR | 316-333 | 12.150 |
| Nac | 170-184 | 12.116 |
| MetR | 298-321 | 12.029 |
| MetJ | 265-272 | 11.820 |
| SoxS | 69-86 | 10.883 |
| ModE | 295-321 | 10.798 |
| Lrp | 124-135 | 10.590 |
| Ada | 306-333 | 10.317 |
| TyrR | 372-393 | 10.265 |
| AraC | 320-337 | 9.940 |
| NorR | 297-313 | 9.520 |
| GntR | 92-111 | 9.465 |
| ArgP | 125-137 | 9.406 |
| PspF | 94-110 | 9.292 |
| DnaA | 207-215 | 9.246 |
| NarL | 338-344 | 8.932 |
| MelR | 307-324 | 8.682 |
| IdnR | 266-281 | 8.515 |
| TorR | 116-125 | 7.655 |
| RhaS | 7-23 | 7.320 |
| MalT | 312-321 | 6.938 |
| FadR | 102-118 | 6.870 |
| LacI | 107-127 | 6.714 |
| GalS | 341-356 | 6.597 |
| GalR | 341-356 | 6.597 |
| NarP | 151-157 | 6.454 |
| FruR | 32-49 | 6.025 |
| FhlA | 165-204 | 5.567 |