| TF name | Position | PWM scan score |
| ArcA | 140-200 | 35.648 |
| OxyR | 349-393 | 22.264 |
| CytR | 353-392 | 20.143 |
| Rob | 348-368 | 18.297 |
| ModE | 35-61 | 17.759 |
| H-NS | 34-48 | 17.214 |
| SoxS | 364-381 | 16.226 |
| Fur | 194-208 | 15.847 |
| AgaR | 133-156 | 15.833 |
| CysB | 353-394 | 15.817 |
| MetR | 185-208 | 15.364 |
| FNR | 164-185 | 15.002 |
| IHF | 371-383 | 14.896 |
| NagC | 181-203 | 14.849 |
| UlaR | 264-283 | 14.826 |
| CRP | 184-205 | 14.500 |
| GntR | 159-178 | 13.569 |
| OmpR | 181-200 | 13.519 |
| Nac | 183-197 | 13.459 |
| Fis | 25-45 | 13.161 |
| GlpR | 370-389 | 13.052 |
| Ada | 249-276 | 12.996 |
| GadE | 348-367 | 12.880 |
| RcsB | 188-201 | 12.437 |
| ArgR | 32-47 | 12.403 |
| GcvA | 368-396 | 12.059 |
| DcuR | 134-188 | 12.004 |
| PhoB | 353-372 | 11.891 |
| Lrp | 347-358 | 11.592 |
| IdnR | 167-182 | 11.285 |
| TorR | 344-353 | 11.212 |
| PhoP | 191-207 | 11.018 |
| DnaA | 166-174 | 10.924 |
| CpxR | 261-275 | 10.671 |
| FhlA | 18-57 | 10.544 |
| NarL | 340-346 | 10.241 |
| GalR | 381-396 | 9.951 |
| GalS | 381-396 | 9.951 |
| TyrR | 42-63 | 9.889 |
| MarA | 342-362 | 9.878 |
| CueR | 234-252 | 9.569 |
| PspF | 200-216 | 9.520 |
| MetJ | 1-8 | 9.447 |
| UxuR | 308-325 | 9.309 |
| AraC | 1-18 | 9.163 |
| DeoR | 345-360 | 9.160 |
| NorR | 40-56 | 8.976 |
| ArgP | 39-51 | 8.494 |
| NarP | 330-336 | 8.372 |
| FruR | 99-116 | 7.780 |
| XylR | 258-275 | 7.529 |
| Mlc | 370-392 | 7.214 |
| MelR | 152-169 | 7.014 |
| TrpR | 140-157 | 6.450 |
| FadR | 297-313 | 5.677 |
| NtrC | 102-118 | 5.655 |
| MalT | 252-261 | 5.426 |
| LacI | 161-181 | 5.045 |