| TF name | Position | PWM scan score |
| ArcA | 319-379 | 26.606 |
| CysB | 349-390 | 20.099 |
| FNR | 334-355 | 17.639 |
| TyrR | 22-43 | 17.082 |
| Rob | 284-304 | 16.826 |
| OmpR | 358-377 | 16.539 |
| OxyR | 308-352 | 16.338 |
| IHF | 281-293 | 15.720 |
| GadE | 26-45 | 15.517 |
| DeoR | 26-41 | 15.330 |
| Mlc | 271-293 | 15.327 |
| Fur | 237-251 | 15.235 |
| ModE | 273-299 | 14.806 |
| ArgP | 288-300 | 14.749 |
| AgaR | 273-296 | 14.041 |
| CpxR | 292-306 | 13.806 |
| MetR | 313-336 | 13.700 |
| NagC | 273-295 | 13.617 |
| SoxS | 215-232 | 13.583 |
| CytR | 327-366 | 13.416 |
| Ada | 320-347 | 13.342 |
| H-NS | 338-352 | 13.252 |
| Lrp | 360-371 | 13.152 |
| ArgR | 30-45 | 13.104 |
| Nac | 362-376 | 13.083 |
| GcvA | 348-376 | 12.866 |
| CRP | 322-343 | 12.722 |
| AraC | 281-298 | 12.603 |
| UlaR | 29-48 | 12.464 |
| FhlA | 328-367 | 12.044 |
| DcuR | 187-241 | 11.725 |
| MarA | 280-300 | 11.420 |
| TorR | 25-34 | 11.105 |
| NarP | 171-177 | 10.626 |
| Fis | 22-42 | 10.524 |
| NorR | 333-349 | 10.487 |
| GntR | 320-339 | 10.148 |
| XylR | 284-301 | 9.998 |
| RcsB | 367-380 | 9.925 |
| LexA | 24-43 | 9.805 |
| DnaA | 368-376 | 9.731 |
| IdnR | 335-350 | 9.660 |
| GlpR | 342-361 | 9.573 |
| NarL | 245-251 | 9.333 |
| PurR | 1-16 | 9.325 |
| PhoP | 282-298 | 9.277 |
| GalS | 292-307 | 8.418 |
| GalR | 292-307 | 8.418 |
| MelR | 241-258 | 8.387 |
| PhoB | 167-186 | 8.328 |
| FruR | 48-65 | 6.628 |
| PspF | 243-259 | 6.401 |
| UxuR | 289-306 | 6.254 |
| MetJ | 28-35 | 5.992 |