| TF name | Position | PWM scan score |
| ArcA | 335-395 | 26.574 |
| OmpR | 344-363 | 21.579 |
| Mlc | 318-340 | 19.597 |
| CysB | 331-372 | 17.656 |
| DcuR | 332-386 | 17.618 |
| NagC | 345-367 | 15.645 |
| FNR | 286-307 | 15.438 |
| UlaR | 367-386 | 14.994 |
| Nac | 89-103 | 14.158 |
| GlpR | 344-363 | 13.389 |
| PhoB | 304-323 | 13.310 |
| IHF | 370-382 | 13.252 |
| H-NS | 236-250 | 13.136 |
| CRP | 238-259 | 12.776 |
| UxuR | 94-111 | 12.613 |
| MarA | 151-171 | 12.612 |
| ModE | 305-331 | 12.572 |
| SoxS | 340-357 | 12.502 |
| GcvA | 354-382 | 12.299 |
| ArgP | 6-18 | 12.150 |
| Fis | 344-364 | 12.000 |
| RcsB | 358-371 | 11.982 |
| PspF | 126-142 | 11.971 |
| GadE | 348-367 | 11.764 |
| Lrp | 316-327 | 11.387 |
| LacI | 318-338 | 11.280 |
| CpxR | 287-301 | 10.881 |
| MetR | 70-93 | 10.573 |
| GntR | 316-335 | 10.435 |
| CytR | 340-379 | 10.094 |
| AgaR | 368-391 | 10.010 |
| AraC | 310-327 | 9.194 |
| OxyR | 347-391 | 8.703 |
| Fur | 346-360 | 8.679 |
| XylR | 3-20 | 8.527 |
| FhlA | 286-325 | 8.481 |
| ArgR | 377-392 | 8.372 |
| DeoR | 347-362 | 8.174 |
| DnaA | 383-391 | 8.160 |
| MetJ | 79-86 | 8.013 |
| MelR | 375-392 | 7.985 |
| Rob | 325-345 | 7.966 |
| NarP | 289-295 | 7.740 |
| PhoP | 227-243 | 7.704 |
| NarL | 348-354 | 7.680 |
| RhaS | 256-272 | 7.413 |
| Ada | 301-328 | 7.369 |
| IdnR | 331-346 | 7.152 |
| PurR | 40-55 | 7.071 |
| FadR | 167-183 | 6.712 |
| CueR | 24-42 | 6.695 |
| TorR | 346-355 | 6.651 |
| LexA | 362-381 | 6.441 |
| NorR | 375-391 | 6.374 |
| MalT | 151-160 | 6.014 |
| TyrR | 318-339 | 5.572 |
| FruR | 343-360 | 5.415 |