| TF name | Position | PWM scan score |
| ArcA | 281-341 | 28.761 |
| CysB | 294-335 | 20.696 |
| OmpR | 103-122 | 18.942 |
| PhoP | 313-329 | 18.728 |
| MetR | 91-114 | 17.865 |
| TyrR | 149-170 | 17.199 |
| Fis | 312-332 | 16.956 |
| XylR | 100-117 | 16.830 |
| OxyR | 334-378 | 16.602 |
| NagC | 244-266 | 16.228 |
| Fur | 375-389 | 16.187 |
| Ada | 333-360 | 14.433 |
| CpxR | 104-118 | 14.315 |
| RcsB | 241-254 | 14.019 |
| LexA | 316-335 | 14.010 |
| ArgR | 314-329 | 13.843 |
| H-NS | 106-120 | 13.053 |
| AgaR | 96-119 | 12.801 |
| GcvA | 311-339 | 12.773 |
| CRP | 303-324 | 12.757 |
| CytR | 285-324 | 12.591 |
| Mlc | 282-304 | 12.425 |
| Nac | 297-311 | 12.189 |
| GadE | 322-341 | 12.185 |
| SoxS | 342-359 | 12.183 |
| PspF | 308-324 | 12.166 |
| FNR | 306-327 | 12.137 |
| UxuR | 280-297 | 11.512 |
| IHF | 315-327 | 11.384 |
| IdnR | 341-356 | 10.909 |
| MarA | 100-120 | 10.846 |
| Rob | 314-334 | 10.844 |
| Lrp | 241-252 | 10.813 |
| UlaR | 97-116 | 10.310 |
| DeoR | 113-128 | 10.249 |
| ArgP | 355-367 | 10.242 |
| NarL | 59-65 | 10.130 |
| AraC | 288-305 | 10.086 |
| RhaS | 9-25 | 9.958 |
| TorR | 298-307 | 9.826 |
| GlpR | 283-302 | 9.651 |
| FruR | 284-301 | 9.476 |
| MetJ | 113-120 | 9.382 |
| MelR | 101-118 | 9.370 |
| PhoB | 11-30 | 8.671 |
| GntR | 318-337 | 8.631 |
| NorR | 57-73 | 8.338 |
| NarP | 51-57 | 7.965 |
| TrpR | 368-385 | 7.811 |
| LacI | 111-131 | 7.533 |
| DnaA | 49-57 | 6.989 |
| DcuR | 261-315 | 6.696 |
| CaiF | 294-338 | 6.632 |
| FadR | 114-130 | 6.556 |
| ModE | 150-176 | 6.537 |
| FhlA | 286-325 | 5.404 |
| GalR | 316-331 | 5.337 |
| GalS | 316-331 | 5.337 |