| TF name | Position | PWM scan score |
| ArcA | 335-395 | 23.334 |
| MarA | 378-398 | 15.555 |
| PhoP | 248-264 | 15.190 |
| CysB | 338-379 | 14.899 |
| OmpR | 342-361 | 14.768 |
| ModE | 22-48 | 14.615 |
| ArgR | 350-365 | 14.594 |
| GadE | 346-365 | 14.243 |
| OxyR | 343-387 | 13.421 |
| NagC | 332-354 | 13.260 |
| CRP | 184-205 | 12.652 |
| Fis | 277-297 | 12.555 |
| Mlc | 330-352 | 12.521 |
| SoxS | 54-71 | 12.423 |
| RcsB | 1-14 | 12.283 |
| H-NS | 365-379 | 12.115 |
| Nac | 287-301 | 12.087 |
| FNR | 262-283 | 12.069 |
| MetJ | 151-158 | 11.889 |
| PhoB | 321-340 | 11.840 |
| UlaR | 157-176 | 11.448 |
| FruR | 14-31 | 11.286 |
| Fur | 285-299 | 11.277 |
| GcvA | 273-301 | 11.094 |
| CytR | 42-81 | 10.692 |
| MetR | 343-366 | 10.637 |
| Rob | 188-208 | 10.415 |
| NarL | 185-191 | 10.130 |
| DeoR | 1-16 | 10.104 |
| PspF | 294-310 | 10.084 |
| UxuR | 184-201 | 10.011 |
| CpxR | 245-259 | 9.926 |
| TyrR | 322-343 | 9.768 |
| MelR | 68-85 | 9.681 |
| TorR | 123-132 | 9.678 |
| AgaR | 251-274 | 9.631 |
| GalS | 128-143 | 9.624 |
| GalR | 128-143 | 9.624 |
| IHF | 196-208 | 9.602 |
| Lrp | 248-259 | 9.561 |
| NarP | 37-43 | 9.477 |
| XylR | 199-216 | 9.086 |
| AraC | 358-375 | 9.061 |
| ArgP | 254-266 | 8.610 |
| GlpR | 252-271 | 8.552 |
| DnaA | 190-198 | 8.304 |
| NorR | 185-201 | 8.254 |
| GntR | 232-251 | 7.943 |
| FadR | 230-246 | 7.880 |
| CueR | 253-271 | 7.756 |
| Ada | 353-380 | 7.725 |
| NtrC | 361-377 | 7.675 |
| IdnR | 261-276 | 6.984 |
| FhlA | 327-366 | 5.679 |