| TF name | Position | PWM scan score |
| CysB | 300-341 | 28.077 |
| ArcA | 2-62 | 24.127 |
| CytR | 19-58 | 20.889 |
| PhoB | 67-86 | 18.067 |
| ModE | 321-347 | 16.026 |
| Mlc | 329-351 | 15.972 |
| Fur | 321-335 | 15.338 |
| OxyR | 23-67 | 15.186 |
| UlaR | 324-343 | 14.977 |
| DcuR | 287-341 | 14.717 |
| FNR | 16-37 | 14.137 |
| GadE | 271-290 | 13.998 |
| NorR | 338-354 | 13.156 |
| OmpR | 18-37 | 12.947 |
| MelR | 8-25 | 12.901 |
| IHF | 321-333 | 12.853 |
| NagC | 317-339 | 12.681 |
| Ada | 33-60 | 12.640 |
| CRP | 34-55 | 12.569 |
| AgaR | 282-305 | 12.296 |
| DeoR | 91-106 | 12.011 |
| MetR | 319-342 | 11.717 |
| Fis | 26-46 | 11.651 |
| CpxR | 324-338 | 11.251 |
| H-NS | 315-329 | 11.215 |
| ArgP | 48-60 | 11.123 |
| PhoP | 262-278 | 11.115 |
| Lrp | 296-307 | 10.857 |
| FhlA | 333-372 | 10.765 |
| GlpR | 36-55 | 10.539 |
| Nac | 319-333 | 10.520 |
| Rob | 211-231 | 10.490 |
| PspF | 33-49 | 10.440 |
| TorR | 298-307 | 10.329 |
| GcvA | 326-354 | 10.171 |
| GntR | 13-32 | 10.124 |
| MarA | 49-69 | 9.931 |
| FadR | 35-51 | 9.823 |
| TrpR | 266-283 | 9.689 |
| NarL | 4-10 | 9.240 |
| SoxS | 371-388 | 9.165 |
| RcsB | 34-47 | 9.108 |
| DnaA | 48-56 | 8.951 |
| AraC | 29-46 | 8.762 |
| ArgR | 29-44 | 8.672 |
| TyrR | 310-331 | 8.504 |
| RhaS | 151-167 | 8.311 |
| NtrC | 324-340 | 7.875 |
| NarP | 205-211 | 7.466 |
| MetJ | 46-53 | 7.327 |
| XylR | 173-190 | 6.976 |
| GalR | 173-188 | 6.676 |
| GalS | 173-188 | 6.676 |
| MalT | 37-46 | 6.390 |
| LacI | 328-348 | 6.368 |
| FruR | 92-109 | 5.756 |
| CueR | 357-375 | 5.634 |