| TF name | Position | PWM scan score |
| ArcA | 338-398 | 30.087 |
| NagC | 366-388 | 26.653 |
| CysB | 262-303 | 21.105 |
| CytR | 350-389 | 19.461 |
| OmpR | 362-381 | 18.185 |
| DcuR | 209-263 | 17.987 |
| FNR | 52-73 | 16.782 |
| Mlc | 364-386 | 16.747 |
| OxyR | 350-394 | 16.546 |
| GadE | 368-387 | 16.481 |
| Fis | 365-385 | 16.095 |
| CRP | 361-382 | 15.215 |
| PspF | 267-283 | 14.993 |
| ModE | 353-379 | 14.380 |
| Ada | 82-109 | 14.114 |
| H-NS | 363-377 | 13.883 |
| Nac | 23-37 | 13.860 |
| UxuR | 350-367 | 13.553 |
| GcvA | 358-386 | 13.338 |
| PhoP | 370-386 | 13.264 |
| UlaR | 287-306 | 13.208 |
| IHF | 213-225 | 12.867 |
| GalR | 32-47 | 12.788 |
| GalS | 32-47 | 12.788 |
| RcsB | 274-287 | 12.620 |
| Rob | 58-78 | 12.036 |
| SoxS | 165-182 | 12.019 |
| PhoB | 117-136 | 11.711 |
| FruR | 214-231 | 11.579 |
| ArgP | 307-319 | 11.464 |
| AgaR | 294-317 | 11.175 |
| ArgR | 210-225 | 11.014 |
| TorR | 361-370 | 10.649 |
| MetR | 349-372 | 10.529 |
| Lrp | 102-113 | 10.283 |
| TyrR | 211-232 | 10.198 |
| MetJ | 297-304 | 10.171 |
| Fur | 55-69 | 10.084 |
| XylR | 94-111 | 10.073 |
| DeoR | 54-69 | 9.597 |
| NtrC | 285-301 | 9.460 |
| NarL | 382-388 | 9.240 |
| NorR | 54-70 | 9.060 |
| MarA | 241-261 | 9.049 |
| CaiF | 81-125 | 8.934 |
| GlpR | 365-384 | 8.922 |
| CpxR | 356-370 | 8.701 |
| DnaA | 158-166 | 8.397 |
| NarP | 25-31 | 7.740 |
| LexA | 122-141 | 6.850 |
| FadR | 290-306 | 6.671 |
| FhlA | 290-329 | 6.583 |
| AraC | 109-126 | 6.530 |
| IdnR | 292-307 | 6.457 |
| MelR | 260-277 | 6.439 |
| GntR | 359-378 | 6.092 |
| PurR | 213-228 | 5.854 |