| TF name | Position | PWM scan score |
| CysB | 161-202 | 17.589 |
| AgaR | 160-183 | 17.483 |
| ArcA | 322-382 | 15.704 |
| PhoP | 342-358 | 14.345 |
| OmpR | 229-248 | 13.940 |
| H-NS | 351-365 | 13.627 |
| NagC | 231-253 | 13.334 |
| Lrp | 171-182 | 13.202 |
| AraC | 169-186 | 13.180 |
| OxyR | 211-255 | 12.890 |
| FNR | 347-368 | 12.541 |
| RcsB | 169-182 | 12.360 |
| PhoB | 242-261 | 12.301 |
| SoxS | 354-371 | 12.262 |
| DnaA | 3-11 | 11.932 |
| XylR | 227-244 | 11.750 |
| GadE | 173-192 | 11.717 |
| IHF | 168-180 | 11.511 |
| CytR | 334-373 | 11.382 |
| UlaR | 165-184 | 11.005 |
| Fis | 353-373 | 10.839 |
| CRP | 162-183 | 10.635 |
| CpxR | 2-16 | 10.602 |
| Nac | 345-359 | 10.353 |
| TyrR | 165-186 | 10.308 |
| ModE | 321-347 | 10.090 |
| LexA | 236-255 | 9.761 |
| GcvA | 215-243 | 9.754 |
| FadR | 57-73 | 9.708 |
| FhlA | 216-255 | 9.694 |
| ArgP | 173-185 | 9.550 |
| TorR | 168-177 | 9.263 |
| GlpR | 346-365 | 9.049 |
| DeoR | 3-18 | 8.928 |
| UxuR | 107-124 | 8.869 |
| Mlc | 224-246 | 8.806 |
| MarA | 292-312 | 8.780 |
| NorR | 334-350 | 8.704 |
| PurR | 109-124 | 8.513 |
| NarL | 54-60 | 8.290 |
| LacI | 319-339 | 8.201 |
| IdnR | 168-183 | 8.062 |
| Ada | 215-242 | 7.638 |
| MelR | 46-63 | 7.469 |
| MalT | 319-328 | 7.438 |
| NarP | 344-350 | 7.423 |
| ArgR | 297-312 | 7.330 |
| MetJ | 103-110 | 7.328 |
| DcuR | 338-392 | 7.290 |
| MetR | 199-222 | 7.096 |
| CueR | 134-152 | 5.892 |
| FruR | 213-230 | 5.626 |
| PspF | 276-292 | 5.350 |
| GntR | 160-179 | 5.002 |