| TF name | Position | PWM scan score |
| SoxS | 77-94 | 16.006 |
| ArcA | 138-198 | 14.545 |
| IHF | 83-95 | 14.070 |
| NorR | 85-101 | 13.250 |
| FNR | 83-104 | 13.224 |
| CRP | 83-104 | 13.097 |
| ArgP | 87-99 | 12.627 |
| TyrR | 80-101 | 12.591 |
| H-NS | 86-100 | 12.292 |
| UlaR | 87-106 | 12.122 |
| PhoP | 193-209 | 12.048 |
| MetJ | 165-172 | 11.400 |
| XylR | 81-98 | 11.350 |
| ModE | 246-272 | 10.961 |
| Lrp | 83-94 | 10.615 |
| CpxR | 84-98 | 10.461 |
| AraC | 83-100 | 9.678 |
| LexA | 85-104 | 9.375 |
| Fis | 370-390 | 9.323 |
| NagC | 155-177 | 9.105 |
| PhoB | 354-373 | 9.004 |
| LacI | 353-373 | 8.812 |
| Rob | 315-335 | 8.797 |
| Fur | 170-184 | 8.361 |
| MetR | 168-191 | 8.321 |
| NarL | 85-91 | 8.131 |
| Ada | 194-221 | 8.077 |
| RcsB | 87-100 | 8.031 |
| UxuR | 88-105 | 7.765 |
| TorR | 82-91 | 7.655 |
| AgaR | 363-386 | 7.522 |
| OmpR | 255-274 | 7.438 |
| Nac | 199-213 | 7.347 |
| PurR | 10-25 | 7.270 |
| GadE | 257-276 | 7.155 |
| DeoR | 93-108 | 7.089 |
| MarA | 168-188 | 6.633 |
| NarP | 135-141 | 6.512 |
| GntR | 194-213 | 6.290 |
| ArgR | 206-221 | 6.116 |
| CysB | 162-203 | 5.825 |
| NtrC | 306-322 | 5.782 |
| PspF | 257-273 | 5.773 |
| MelR | 145-162 | 5.745 |
| Mlc | 190-212 | 5.700 |
| CytR | 86-125 | 5.458 |
| GalS | 165-180 | 5.372 |
| GalR | 165-180 | 5.372 |
| DnaA | 85-93 | 5.371 |
| GcvA | 196-224 | 5.221 |