| TF name | Position | PWM scan score |
| ArcA | 206-266 | 32.066 |
| CysB | 226-267 | 31.385 |
| OxyR | 308-352 | 19.927 |
| Ada | 318-345 | 19.778 |
| AgaR | 323-346 | 19.349 |
| CytR | 330-369 | 19.268 |
| ModE | 40-66 | 18.579 |
| FNR | 348-369 | 18.191 |
| Mlc | 240-262 | 18.141 |
| OmpR | 241-260 | 17.361 |
| MelR | 100-117 | 16.662 |
| CRP | 335-356 | 15.396 |
| ArgR | 235-250 | 15.277 |
| NagC | 149-171 | 15.247 |
| H-NS | 254-268 | 15.085 |
| PhoB | 129-148 | 15.026 |
| Fis | 240-260 | 14.948 |
| MetR | 245-268 | 14.403 |
| UlaR | 340-359 | 14.085 |
| SoxS | 249-266 | 13.868 |
| Fur | 255-269 | 13.510 |
| RcsB | 234-247 | 13.318 |
| DeoR | 337-352 | 13.248 |
| IHF | 250-262 | 13.037 |
| Nac | 340-354 | 13.004 |
| NorR | 324-340 | 12.706 |
| PhoP | 124-140 | 12.534 |
| GlpR | 141-160 | 12.355 |
| Rob | 86-106 | 12.310 |
| ArgP | 242-254 | 12.240 |
| GcvA | 252-280 | 12.082 |
| DcuR | 305-359 | 12.028 |
| XylR | 364-381 | 11.900 |
| Lrp | 241-252 | 10.798 |
| TyrR | 345-366 | 10.744 |
| MarA | 232-252 | 10.677 |
| FadR | 62-78 | 10.193 |
| GadE | 88-107 | 10.037 |
| FruR | 377-394 | 9.888 |
| NarL | 238-244 | 9.580 |
| GntR | 349-368 | 9.397 |
| MalT | 167-176 | 9.173 |
| CpxR | 61-75 | 9.156 |
| DnaA | 379-387 | 8.951 |
| LexA | 331-350 | 8.320 |
| TrpR | 221-238 | 8.203 |
| PspF | 252-268 | 7.687 |
| FhlA | 331-370 | 6.953 |
| CueR | 298-316 | 6.772 |
| IdnR | 113-128 | 6.457 |
| LacI | 351-371 | 6.395 |
| AraC | 250-267 | 6.328 |
| UxuR | 311-328 | 6.254 |
| NarP | 374-380 | 6.176 |
| TorR | 149-158 | 5.398 |