| TF name | Position | PWM scan score |
| ArcA | 270-330 | 28.435 |
| CysB | 301-342 | 22.609 |
| NagC | 256-278 | 20.812 |
| Mlc | 254-276 | 18.154 |
| GcvA | 371-399 | 17.445 |
| MetR | 185-208 | 16.789 |
| CytR | 271-310 | 16.614 |
| OmpR | 317-336 | 16.372 |
| FNR | 292-313 | 16.167 |
| ArgP | 326-338 | 15.484 |
| GadE | 312-331 | 14.335 |
| UxuR | 240-257 | 13.946 |
| CRP | 52-73 | 13.833 |
| TyrR | 300-321 | 13.686 |
| OxyR | 31-75 | 13.522 |
| Fur | 325-339 | 13.312 |
| PspF | 368-384 | 13.059 |
| IdnR | 289-304 | 12.900 |
| ArgR | 324-339 | 12.703 |
| AraC | 319-336 | 12.519 |
| PhoB | 68-87 | 12.427 |
| H-NS | 321-335 | 12.242 |
| XylR | 194-211 | 12.146 |
| AgaR | 289-312 | 12.136 |
| PhoP | 165-181 | 12.043 |
| IHF | 247-259 | 11.833 |
| MelR | 72-89 | 11.799 |
| DcuR | 245-299 | 11.423 |
| FadR | 203-219 | 11.296 |
| CpxR | 176-190 | 11.281 |
| Ada | 257-284 | 10.948 |
| LacI | 358-378 | 10.941 |
| Lrp | 252-263 | 10.932 |
| MarA | 125-145 | 10.853 |
| Fis | 309-329 | 10.625 |
| Rob | 319-339 | 10.271 |
| Nac | 323-337 | 10.210 |
| GalR | 376-391 | 9.947 |
| GalS | 376-391 | 9.947 |
| DnaA | 135-143 | 9.731 |
| DeoR | 278-293 | 9.632 |
| GlpR | 60-79 | 9.552 |
| SoxS | 127-144 | 9.363 |
| TorR | 204-213 | 9.351 |
| NarL | 291-297 | 9.197 |
| UlaR | 345-364 | 8.823 |
| GntR | 287-306 | 8.560 |
| ModE | 308-334 | 8.292 |
| NorR | 285-301 | 8.254 |
| TrpR | 287-304 | 8.018 |
| RcsB | 289-302 | 7.630 |
| PurR | 291-306 | 7.210 |
| FruR | 183-200 | 6.909 |
| MalT | 336-345 | 6.894 |
| MetJ | 215-222 | 6.080 |
| LexA | 309-328 | 5.836 |
| RhaS | 37-53 | 5.289 |
| CaiF | 301-345 | 5.142 |