| TF name | Position | PWM scan score |
| ArcA | 216-276 | 31.276 |
| CysB | 298-339 | 21.753 |
| NagC | 328-350 | 20.312 |
| FNR | 226-247 | 18.288 |
| AgaR | 218-241 | 17.847 |
| CytR | 303-342 | 16.726 |
| UlaR | 221-240 | 16.702 |
| ArgR | 321-336 | 15.733 |
| Fur | 236-250 | 15.381 |
| TyrR | 226-247 | 15.375 |
| XylR | 225-242 | 15.023 |
| Mlc | 307-329 | 14.749 |
| GadE | 312-331 | 14.356 |
| OmpR | 218-237 | 14.264 |
| H-NS | 366-380 | 14.103 |
| MarA | 368-388 | 14.013 |
| GlpR | 367-386 | 13.407 |
| ArgP | 231-243 | 13.362 |
| DcuR | 284-338 | 13.357 |
| GcvA | 319-347 | 13.275 |
| CpxR | 299-313 | 12.944 |
| OxyR | 288-332 | 12.736 |
| LexA | 237-256 | 12.636 |
| Nac | 228-242 | 12.636 |
| Fis | 318-338 | 12.268 |
| PhoB | 358-377 | 12.157 |
| CRP | 27-48 | 12.149 |
| DnaA | 234-242 | 12.065 |
| PhoP | 226-242 | 12.025 |
| IHF | 321-333 | 11.876 |
| Rob | 259-279 | 11.854 |
| AraC | 236-253 | 11.731 |
| SoxS | 16-33 | 11.686 |
| DeoR | 65-80 | 11.566 |
| CaiF | 226-270 | 11.099 |
| ModE | 259-285 | 10.857 |
| Lrp | 302-313 | 10.668 |
| FhlA | 193-232 | 10.631 |
| GntR | 86-105 | 10.492 |
| NorR | 85-101 | 10.470 |
| RcsB | 227-240 | 10.153 |
| PurR | 4-19 | 10.094 |
| NarL | 244-250 | 9.580 |
| MetR | 211-234 | 9.534 |
| Ada | 66-93 | 8.974 |
| PspF | 242-258 | 8.909 |
| TorR | 222-231 | 8.828 |
| FadR | 98-114 | 8.800 |
| IdnR | 222-237 | 8.757 |
| UxuR | 317-334 | 8.487 |
| LacI | 230-250 | 7.973 |
| NarP | 113-119 | 7.828 |
| FruR | 26-43 | 7.249 |
| MetJ | 341-348 | 7.171 |
| MelR | 28-45 | 7.030 |
| GalR | 268-283 | 6.100 |
| GalS | 268-283 | 6.100 |
| RhaS | 329-345 | 5.480 |