| TF name | Position | PWM scan score |
| ArcA | 336-396 | 28.244 |
| MetR | 343-366 | 22.131 |
| UlaR | 348-367 | 19.721 |
| CysB | 349-390 | 18.062 |
| OxyR | 339-383 | 16.951 |
| OmpR | 282-301 | 15.722 |
| CRP | 171-192 | 15.556 |
| CytR | 339-378 | 14.554 |
| DcuR | 257-311 | 14.277 |
| Nac | 211-225 | 13.677 |
| FNR | 165-186 | 13.533 |
| GcvA | 138-166 | 13.474 |
| RcsB | 210-223 | 13.431 |
| Ada | 194-221 | 12.885 |
| H-NS | 79-93 | 12.885 |
| IHF | 348-360 | 11.755 |
| PhoP | 343-359 | 11.564 |
| ArgR | 294-309 | 11.532 |
| CpxR | 125-139 | 11.519 |
| NagC | 363-385 | 11.391 |
| ArgP | 163-175 | 11.357 |
| ModE | 345-371 | 11.244 |
| AraC | 165-182 | 11.082 |
| MarA | 73-93 | 11.041 |
| AgaR | 350-373 | 10.924 |
| Fis | 345-365 | 10.810 |
| GadE | 161-180 | 10.638 |
| GntR | 366-385 | 10.615 |
| SoxS | 343-360 | 10.506 |
| Lrp | 124-135 | 10.452 |
| Fur | 165-179 | 10.379 |
| DnaA | 217-225 | 10.218 |
| XylR | 154-171 | 10.054 |
| GlpR | 284-303 | 10.030 |
| TorR | 164-173 | 9.826 |
| PhoB | 291-310 | 9.661 |
| NarL | 190-196 | 9.333 |
| MelR | 141-158 | 9.280 |
| Mlc | 218-240 | 8.678 |
| IdnR | 164-179 | 8.223 |
| Rob | 336-356 | 8.078 |
| FruR | 334-351 | 7.867 |
| DeoR | 51-66 | 7.786 |
| NarP | 22-28 | 7.762 |
| GalR | 325-340 | 7.104 |
| GalS | 325-340 | 7.104 |
| FhlA | 144-183 | 6.901 |
| FadR | 91-107 | 6.651 |
| UxuR | 349-366 | 6.610 |
| LexA | 301-320 | 5.976 |
| MetJ | 169-176 | 5.811 |
| PurR | 334-349 | 5.749 |
| NorR | 310-326 | 5.568 |
| PspF | 228-244 | 5.528 |
| MalT | 357-366 | 5.511 |
| LacI | 343-363 | 5.223 |