| TF name | Position | PWM scan score |
| ArcA | 215-275 | 15.134 |
| FNR | 254-275 | 14.441 |
| GadE | 118-137 | 14.129 |
| H-NS | 368-382 | 12.885 |
| Nac | 75-89 | 12.129 |
| CRP | 119-140 | 12.092 |
| PhoB | 156-175 | 12.042 |
| UlaR | 239-258 | 11.954 |
| IHF | 80-92 | 11.401 |
| CytR | 354-393 | 11.401 |
| AraC | 236-253 | 11.263 |
| MarA | 362-382 | 11.041 |
| CysB | 339-380 | 10.758 |
| Fur | 236-250 | 10.463 |
| TorR | 76-85 | 10.457 |
| Fis | 119-139 | 10.418 |
| Ada | 2-29 | 9.776 |
| OmpR | 255-274 | 9.683 |
| GlpR | 199-218 | 9.504 |
| FadR | 197-213 | 9.441 |
| NorR | 253-269 | 9.426 |
| AgaR | 218-241 | 9.351 |
| SoxS | 67-84 | 9.219 |
| ArgR | 76-91 | 9.198 |
| ArgP | 237-249 | 9.154 |
| NarL | 237-243 | 9.129 |
| XylR | 249-266 | 9.029 |
| DcuR | 66-120 | 8.841 |
| NagC | 245-267 | 8.471 |
| RcsB | 236-249 | 8.432 |
| ModE | 231-257 | 8.421 |
| PspF | 34-50 | 8.392 |
| GalR | 123-138 | 8.264 |
| GalS | 123-138 | 8.264 |
| DnaA | 340-348 | 8.112 |
| PhoP | 124-140 | 8.047 |
| MelR | 3-20 | 7.837 |
| DeoR | 340-355 | 7.786 |
| NarP | 311-317 | 7.762 |
| CpxR | 80-94 | 7.559 |
| Lrp | 79-90 | 7.533 |
| Rob | 363-383 | 7.460 |
| TyrR | 121-142 | 7.401 |
| MalT | 176-185 | 7.226 |
| UxuR | 100-117 | 7.073 |
| MetR | 23-46 | 6.443 |
| TrpR | 155-172 | 6.381 |
| OxyR | 20-64 | 6.243 |
| IdnR | 161-176 | 5.735 |
| LexA | 150-169 | 5.577 |